@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07647_EPHA4_MOUSE: (2014-10-11 )
MAGIFYFILFSFLFGICDAVTGSRVYPANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEASQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRESQFGKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRNLAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEEQNGECQACKIGYYKALSTDASCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSSPQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTRVSITDLLAHTNYTFEIWAVNGVSKYNPSPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRIVRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGDGANSTVLLVSVSGSVVLVVILIAAFVISRRRSKYSKAKQEADEEKHLNQGVRTYVDPFTYEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKLIRNPNSLKRTGSESSRPNTALLDPSSPEFSAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMHGRMVPV

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AS6_A_2(2XVD)

[Raw transfer]



7X6_A_2(2VWZ)

[Raw transfer]



C07_A_2(4G2F)

[Raw transfer]



ANP_D_4(1MQB)

[Raw transfer]



7X5_A_2(2VWY)

[Raw transfer]



7X4_A_2(2VWX)

[Raw transfer]



7X8_A_2(2VX1)

[Raw transfer]



ADP_D_12(2HEN)

[Raw transfer]



ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]



IHZ_A_2(3DKO)

[Raw transfer]



7X7_A_2(2VX0)

[Raw transfer]



GOL_A_6(2XYU)

[Raw transfer]



X9F_A_2(2X9F)

[Raw transfer]



32W_A_2(4BB4)

[Raw transfer]



ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]



ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]



IFC_A_2(3DZQ)

[Raw transfer]



STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]



GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]



ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]



ANP_A_3(2QO9)

[Raw transfer]



ANP_A_5(2QOC)

[Raw transfer]



STU_B_4(2YN8)

[Raw transfer]



30K_A_2(4AW5)

[Raw transfer]



ANP_D_4(1JPA)

[Raw transfer]



ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]



CHAIN_B_2(3FXX)

[Raw transfer]
-
CHAIN_B_2(3FY2)

[Raw transfer]
-
12 PsiBlast_PDB 55.4775%-110 - C2 -3FY2 6.2
10 PsiBlast_PDB 55.33100%-119 - C2 -2XYU 2.4
11 PsiBlast_PDB 53.5975%-107 - C2 -3FXX 7.4
14 PsiBlast_PDB 53.3575%-108 - C2 -2QO9 4.1
19 PsiBlast_PDB 52.3675%-112 - C2 -3DZQ 10.8
27 PsiBlast_CBE 51.9675%-105 - C2 -2QOC 5.2
43 PsiBlast_CBE 51.6276%-106 - C2 -2VX1 7.3
31 PsiBlast_CBE 51.4881%-108 - C2 -1JPA 4.1 EPHB2_MOUSE
20 PsiBlast_PDB 51.3975%-108 - C2 -4G2F 5.7
30 PsiBlast_CBE 51.2581%-110 - C2 -1JPA 4.2
47 PsiBlast_CBE 51.0176%-105 - C2 -2VWX 6.4
44 PsiBlast_CBE 50.1676%-104 - C2 -2VX0 7.4
46 PsiBlast_CBE 50.0776%-103 - C2 -2VWY 6.7
45 PsiBlast_CBE 49.9376%-102 - C2 -2VWZ 7.4
40 PsiBlast_CBE 49.8776%-110 - C2 -4BB4 6.7
49 PsiBlast_CBE 49.8177%-108 * C2 *4AW5 7.4
38 PsiBlast_CBE 49.3378%-113 - C2 -2YN8 8.9
42 PsiBlast_CBE 49.1376%-106 - C2 -2X9F 6.3
34 PsiBlast_CBE 48.9583%-107 - C2 -2HEN 5.6
28 PsiBlast_CBE 48.9481%-104 - C2 -3DKO 8.4
36 PsiBlast_CBE 48.5583%-107 - C2 -2HEN 5.5 EPHB2_MOUSE
37 PsiBlast_CBE 48.4083%-107 - C2 -2HEN 4.7 EPHB2_MOUSE
39 PsiBlast_CBE 48.1678%-113 - C2 -2YN8 8.5 EPHB4_HUMAN
35 PsiBlast_CBE 47.6583%-104 - C2 -2HEN 5.1 EPHB2_MOUSE
50 PsiBlast_CBE 47.3074%-110 - C2 -1MQB 4.5
41 PsiBlast_CBE 46.9876%-103 - C2 -2XVD 7.0
48 PsiBlast_CBE 45.1973%-106 - C2 -3KUL 2.9 EPHA8_HUMAN
51 PsiBlast_CBE 44.5374%-108 - C2 -1MQB 4.0 EPHA2_HUMAN