@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07686_VGFR1_MOUSE: (2014-10-12 )
MVSCWDTAVLPYALLGCLLLTGYGSGSKLKVPELSLKGTQHVMQAGQTLFLKCRGEAAHSWSLPTTVSQEDKRLSITPPSACGRDNRQFCSTLTLDTAQANHTGLYTCRYLPTSTSKKKKAESSIYIFVSDAGSPFIEMHTDIPKLVHMTEGRQLIIPCRVTSPNVTVTLKKFPFDTLTPDGQRITWDSRRGFIIANATYKEIGLLNCEATVNGHLYQTNYLTHRQTNTILDVQIRPPSPVRLLHGQTLVLNCTATTELNTRVQMSWNYPGKATKRASIRQRIDRSHSHNNVFHSVLKINNVESRDKGLYTCRVKSGSSFQSFNTSVHVYEKGFISVKHRKQPVQETTAGRRSYRLSMKVKAFPSPEIVWLKDGSPATLKSARYLVHGYSLIIKDVTTEDAGDYTILLGIKQSRLFKNLTATLIVNVKPQIYEKSVSSLPSPPLYPLGSRQVLTCTVYGIPRPTITWLWHPCHHNHSKERYDFCTENEESFILDPSSNLGNRIESISQRMTVIEGTNKTVSTLVVADSQTPGIYSCRAFNKIGTVERNIKFYVTDVPNGFHVSLEKMPAEGEDLKLSCVVNKFLYRDITWILLRTVNNRTMHHSISKQKMATTQDYSITLNLVIKNVSLEDSGTYACRARNIYTGEDILRKTEVLVRDSEAPHLLQNLSDYEVSISGSTTLDCQARGVPAPQITWFKNNHKIQQEPGIILGPGNSTLFIERVTEEDEGVYRCRATNQKGAVESAAYLTVQGTSDKSNLELITLTCTCVAATLFWLLLTLFIRKLKRSSSEVKTDYLSIIMDPDEVPLDEQCERLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEGATASEYKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDLFCLNKDAALHMELKKESLEPGLEQGQKPRLDSVSSSSVTSSSFPEDRSVSDVEGDEDYSEISKQPLTMEDLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRRGDTRLPLKWMAPESIFDKVYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLKEGMRMRTPEYATPEIYQIMLDCWHKDPKERPRFAELVEKLGDLLQANVQQDGKDYIPLNAILTRNSSFTYSTPTFSEDLFKDGFADPHFHSGSSDDVRYVNAFKFMSLERIKTFEELSPNSTSMFEDYQLDTSTLLGSPLLKRFTWTETKPKASMKIDLRIASKSKEAGLSDLPRPSFCFSSCGHIRPVQDDESELGKESCCSPPPDYNSVVLYSSPPA

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8ST_A_2(3HNG)

[Raw transfer]



0KF_A_2(3VO3)

[Raw transfer]



K11_A_2(3EWH)

[Raw transfer]



706_A_3(3EFL)
VGFR2_HUMAN
[Raw transfer]



608_C_3(2P2I)
VGFR2_HUMAN
[Raw transfer]



0JA_A_2(3VNT)

[Raw transfer]



BAX_A_2(4ASD)

[Raw transfer]



03X_A_2(3U6J)

[Raw transfer]



42Q_A_2(3VHE)

[Raw transfer]



AAX_B_2(1Y6B)

[Raw transfer]



AXI_A_2(4AG8)

[Raw transfer]



00J_A_2(2XIR)

[Raw transfer]



994_B_2(2P2H)

[Raw transfer]



KIM_A_4(3CJG)

[Raw transfer]



AAZ_A_2(1Y6A)

[Raw transfer]



BPK_A_2(3VHK)

[Raw transfer]



EDO_A_3(3VHK)

[Raw transfer]



EDO_A_3(3VNT)

[Raw transfer]
1 PsiBlast_PDB 94.3192% -98 - C2 -3HNG 8.7
9 PsiBlast_PDB 88.6970% -99 - C2 -3VHE 10.6
2 PsiBlast_PDB 88.4371% -95 - C2 -3VHK 7.0
4 PsiBlast_PDB 85.4871%-110 - C2 -1Y6B 8.3
7 PsiBlast_PDB 84.0267% -97 - C2 -4ASD 9.8
3 PsiBlast_PDB 83.6871%-112 - C2 -1Y6A 6.6
12 PsiBlast_PDB 82.5668%-101 - C2 -2XIR 9.6
10 PsiBlast_PDB 82.1768% -96 - C2 -3VNT 9.9
11 PsiBlast_PDB 82.1068% -96 - C2 -3VO3 9.4
16 PsiBlast_PDB 81.9266% -97 - C2 -3EWH 11.1
13 PsiBlast_PDB 81.8268% -97 - C2 -4AG8 9.5
15 PsiBlast_PDB 81.4367% -94 * C2 *3U6J 11.9
20 PsiBlast_PDB 80.1466%-102 - C2 -2P2H 7.3
18 PsiBlast_PDB 79.5266%-102 - C2 -2P2I 9.6 VGFR2_HUMAN
19 PsiBlast_PDB 79.0666% -98 - C2 -3EFL 8.8 VGFR2_HUMAN
17 PsiBlast_PDB 77.3665%-103 - C2 -3CJG 6.7