@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07714_VGFR1_HUMAN: (2014-10-13 )
MVSYWDTGVLLCALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSKESERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSCKYLAVPTSKKKETESAIYIFISDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPVKLLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKRASVRRRIDQSNSHANIFYSVLTIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLSMKVKAFPSPEVVWLKDGLPATEKSARYLTRGYSLIIKDVTEEDAGNYTILLSIKQSNVFKNLTATLIVNVKPQIYEKAVSSFPDPALYPLGSRQILTCTAYGIPQPTIKWFWHPCNHNHSEARCDFCSNNEESFILDADSNMGNRIESITQRMAIIEGKNKMASTLVVADSRISGIYICIASNKVGTVGRNISFYITDVPNGFHVNLEKMPTEGEDLKLSCTVNKFLYRDVTWILLRTVNNRTMHYSISKQKMAITKEHSITLNLTIMNVSLQDSGTYACRARNVYTGEEILQKKEITIRDQEAPYLLRNLSDHTVAISSSTTLDCHANGVPEPQITWFKNNHKIQQEPGIILGPGSSTLFIERVTEEDEGVYHCKATNQKGSVESSAYLTVQGTSDKSNLELITLTCTCVAATLFWLLLTLFIRKMKRSSSEIKTDYLSIIMDPDEVPLDEQCERLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEGATASEYKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDLFFLNKDAALHMEPKKEKMEPGLEQGKKPRLDSVTSSESFASSGFQEDKSLSDVEEEEDSDGFYKEPITMEDLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAPEYSTPEIYQIMLDCWHRDPKERPRFAELVEKLGDLLQANVQQDGKDYIPINAILTGNSGFTYSTPAFSEDFFKESISAPKFNSGSSDDVRYVNAFKFMSLERIKTFEELLPNATSMFDDYQGDSSTLLASPMLKRFTWTDSKPKASLKIDLRVTSKSKESGLSDVSRPSFCHSSCGHVSEGKRRFTYDHAELERKIACCSPPPDYNSVVLYSTPPI

Atome Classification :

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8ST_A_2(3HNG)

[Raw transfer]



276_A_2(2QU5)

[Raw transfer]



K11_A_2(3EWH)

[Raw transfer]



0KF_A_2(3VO3)

[Raw transfer]



608_C_3(2P2I)
VGFR2_HUMAN
[Raw transfer]



03X_A_2(3U6J)

[Raw transfer]



706_A_3(3EFL)
VGFR2_HUMAN
[Raw transfer]



0JA_A_2(3VNT)

[Raw transfer]



BAX_A_2(4ASD)

[Raw transfer]



42Q_A_2(3VHE)

[Raw transfer]



AAX_B_2(1Y6B)

[Raw transfer]



AXI_A_2(4AG8)

[Raw transfer]



994_B_2(2P2H)

[Raw transfer]



00J_A_2(2XIR)

[Raw transfer]



AAZ_A_2(1Y6A)

[Raw transfer]



BPK_A_2(3VHK)

[Raw transfer]



EDO_A_3(3VHK)

[Raw transfer]



EDO_A_3(3VNT)

[Raw transfer]



KIM_A_4(3CJG)

[Raw transfer]
1 PsiBlast_PDB 94.26100% -96 - C2 -3HNG 8.7
5 PsiBlast_PDB 86.7973% -97 - C2 -3VHE 10.6
2 PsiBlast_PDB 85.8173% -94 - C2 -3VHK 7.0
4 PsiBlast_PDB 83.5373%-109 - C2 -1Y6B 8.3
3 PsiBlast_PDB 81.9173%-111 - C2 -1Y6A 6.6
8 PsiBlast_PDB 80.8366% -95 - C2 -4ASD 9.8
11 PsiBlast_PDB 80.3567% -94 - C2 -3VO3 9.4
10 PsiBlast_PDB 80.1067% -94 - C2 -3VNT 9.9
12 PsiBlast_PDB 79.7067%-100 - C2 -2XIR 9.6
16 PsiBlast_PDB 79.2265% -98 - C2 -3EWH 11.1
13 PsiBlast_PDB 78.5367% -96 - C2 -4AG8 9.5
20 PsiBlast_PDB 78.4565%-102 - C2 -2QU5 10.2
15 PsiBlast_PDB 78.1966% -94 - C2 -3U6J 11.9
17 PsiBlast_PDB 77.1665%-102 - C2 -2P2I 9.6 VGFR2_HUMAN
19 PsiBlast_PDB 77.0465%-102 - C2 -2P2H 7.3
18 PsiBlast_PDB 76.3965% -98 - C2 -3EFL 8.8 VGFR2_HUMAN
21 PsiBlast_CBE 19.9277% -7 * C2 *3CJG 3.2