@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07973_SYTC_HUMAN: (2014-10-14 )
MFEEKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAELNPWPEYIYTRLEMYNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIENGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKADMETLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEEEF

Atome Classification :

(8 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]




409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]




1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]




X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]




1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWT)
SYTC_HUMAN
[Raw transfer]




1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]




1 PsiBlast_PDB 52.32100%-103 - C1 -4HWT 5.3 SYTC_HUMAN
15 PsiBlast_CBE 48.59100% -97 - C1 -4HWT 5.6 SYTC_HUMAN
14 PsiBlast_PDB 16.4944% -90 - C1 -3UH0 8.5 SYTM_YEAST
10 PsiBlast_PDB 14.4045% -89 * C1 *4HWR 6.8 SYT_ECOLI
6 PsiBlast_PDB 13.9545% -87 - C1 -1FYF 8.5 SYT_ECOLI
11 PsiBlast_PDB 12.0945% -88 - C1 -4HWS 9.7 SYT_ECOLI
9 PsiBlast_PDB 11.7945% -87 - C1 -4HWP 8.1 SYT_ECOLI
8 PsiBlast_PDB 11.5245% -87 - C1 -4HWO 8.7 SYT_ECOLI