@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07973_SYT_YERPE: (2014-10-14 )
MPVITLPDGSQRHYDHAVSVLDVALDIGPGLAKACIAGRVNGELVDASDLIESDAQLAIITAKDAEGLEILRHSCAHLLGHAIKQLWPDTKMAIGPVIDNGFYYDVDIEHTLTQEDLALLEKRMHELADKDYDVIKKKVSWQEARDTFAARGEDYKVAILDENISRDDRPGLYHHEEYVDMCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYGTAWGDKKQLNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAEHMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQVRDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDELWTRAEDDLAAALTENGIPFDYQPGEGAFYGPKIEFTLHDCLDRAWQCGTVQLDFSLPGRLSASYIGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNITDSQSDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRGKDLGSLDVNVVVDQLLAEIRSRSLHQLEE

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]



409_B_6(4HWO)
SYT_ECOLI
[Raw transfer]



SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]



SSA_B_6(1FYF)
SYT_ECOLI
[Raw transfer]



TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]



1B2_B_6(4HWR)
SYT_ECOLI
[Raw transfer]



1B3_B_6(4HWS)
SYT_ECOLI
[Raw transfer]



1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]



1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]



X16_B_6(4HWP)
SYT_ECOLI
[Raw transfer]



X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]



AMP_A_4(1QF6)
SYT_ECOLI
[Raw transfer]



THR_B_5(1EVK)
SYT_ECOLI
[Raw transfer]



1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]
19 PsiBlast_CBE 99.5288%-101 - C1 -1QF6 6.5 SYT_ECOLI
32 PsiBlast_CBE 58.9188% -98 - C1 -4HWS 9.7 SYT_ECOLI
33 PsiBlast_CBE 58.7088% -98 - C1 -4HWR 7.4 SYT_ECOLI
35 PsiBlast_CBE 58.6488% -98 - C1 -4HWO 8.7 SYT_ECOLI
8 PsiBlast_PDB 58.2288% -98 - C1 -4HWS 9.6 SYT_ECOLI
3 PsiBlast_PDB 57.6988% -97 - C1 -1FYF 8.5 SYT_ECOLI
27 PsiBlast_CBE 57.2988% -97 - C1 -1FYF 8.6 SYT_ECOLI
34 PsiBlast_CBE 56.8488% -97 - C1 -4HWP 8.6 SYT_ECOLI
5 PsiBlast_PDB 56.2188% -97 - C1 -4HWO 8.8 SYT_ECOLI
31 PsiBlast_CBE 55.7188% -96 - C1 -1EVK 3.2 SYT_ECOLI
7 PsiBlast_PDB 54.5688% -95 - C1 -4HWR 6.8 SYT_ECOLI
6 PsiBlast_PDB 53.9888% -94 - C1 -4HWP 8.2 SYT_ECOLI
15 PsiBlast_PDB 34.4043% -89 - C1 -4HWT 5.0 SYTC_HUMAN
18 PsiBlast_PDB 25.5438% -86 - C1 -3UH0 8.5 SYTM_YEAST