@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF08127_CATB_HUMAN: (2014-10-14 )
MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

APD_A_5(1GMY)
?
[Raw transfer]



78A_A_3(2DCD)
CATB_BOVIN
[Raw transfer]



74M_A_3(2DC9)
CATB_BOVIN
[Raw transfer]



59A_A_3(2DC8)
CATB_BOVIN
[Raw transfer]



75V_A_3(2DCA)
CATB_BOVIN
[Raw transfer]



76V_A_3(2DCB)
CATB_BOVIN
[Raw transfer]



042_A_3(2DC7)
CATB_BOVIN
[Raw transfer]



E6C_A_2(1ITO)
CATB_BOVIN
[Raw transfer]



73V_A_3(2DC6)
?
[Raw transfer]



77B_A_3(2DCC)
CATB_BOVIN
[Raw transfer]



EP2_B_3(1SP4)
?
[Raw transfer]



APD_C_11(1GMY)
?
[Raw transfer]



HNQ_A_4(3AI8)
CATB_HUMAN
[Raw transfer]



APD_A_5(1GMY)
?
[Raw transfer]



HNQ_B_3(3AI8)
?
[Raw transfer]



EOH_C_7(1CSB)
?
[Raw transfer]



EOH_F_8(1CSB)
?
[Raw transfer]



CHAIN_F_6(1CSB)

[Raw transfer]
-
CHAIN_C_3(1CSB)
CATB_HUMAN
[Raw transfer]
-
CHAIN_F_6(1CSB)
?
[Raw transfer]
-
CHAIN_C_3(1CSB)
?
[Raw transfer]
-
AEM_A_4(1GMY)
?
[Raw transfer]



PHQ_D_4(1THE)
CATB_RAT
[Raw transfer]



AEM_C_10(1GMY)
?
[Raw transfer]



PHQ_C_3(1THE)
CATB_RAT
[Raw transfer]



AEM_B_7(1GMY)
?
[Raw transfer]



PYS_B_4(1CTE)
CATB_RAT
[Raw transfer]



PYS_A_3(1CTE)
CATB_RAT
[Raw transfer]



EP2_B_3(1SP4)

[Raw transfer]



PYS_A_3(2IPP)
?
[Raw transfer]



DFA_C_12(1GMY)
?
[Raw transfer]



DFA_A_6(1GMY)
?
[Raw transfer]



DFA_A_6(1GMY)
?
[Raw transfer]



DFA_B_9(1GMY)
?
[Raw transfer]



PHQ_C_3(1THE)
CATB_RAT
[Raw transfer]



PYS_A_3(2IPP)
?
[Raw transfer]



EOH_C_7(1CSB)
CATB_HUMAN
[Raw transfer]



EOH_F_8(1CSB)

[Raw transfer]
23 PsiBlast_CBE 96.65100% -90 - C1 -3AI8 3.5 CATB_HUMAN
4 PsiBlast_PDB 95.78100% -90 - C1 -1GMY 3.5 ?
21 PsiBlast_CBE 95.50100% -91 - C1 -1GMY 3.5 ?
5 PsiBlast_PDB 95.36100% -87 - C1 -3AI8 3.5 ?
22 PsiBlast_CBE 95.20100% -90 - C1 -1GMY 3.3 ?
11 PsiBlast_PDB 92.2688% -91 - C1 -2DC6 4.7 ?
10 PsiBlast_PDB 92.2688% -91 - C1 -1ITO 3.3 CATB_BOVIN
8 PsiBlast_PDB 92.0082% -93 - C1 -1THE 5.5 CATB_RAT
18 PsiBlast_PDB 91.7988% -92 - C1 -2DCD 5.2 CATB_BOVIN
12 PsiBlast_PDB 91.5588% -90 - C1 -2DC7 4.9 CATB_BOVIN
14 PsiBlast_PDB 91.4488% -89 - C1 -2DC9 4.6 CATB_BOVIN
16 PsiBlast_PDB 91.2888% -90 - C1 -2DCB 5.5 CATB_BOVIN
25 PsiBlast_CBE 91.2683% -90 - C1 -1CTE 2.4 CATB_RAT
24 PsiBlast_CBE 91.2282% -87 * C1 *1THE 6.0 CATB_RAT
13 PsiBlast_PDB 91.1488% -89 - C1 -2DC8 3.1 CATB_BOVIN
15 PsiBlast_PDB 90.8988% -88 - C1 -2DCA 4.6 CATB_BOVIN
17 PsiBlast_PDB 90.8388% -89 - C1 -2DCC 4.2 CATB_BOVIN
9 PsiBlast_PDB 89.4083% -84 - C1 -1CTE 1.6 CATB_RAT
26 PsiBlast_CBE 78.78100% -96 - C1 -2IPP 3.5 ?
28 PsiBlast_CBE 78.33100% -93 - C1 -1CSB 4.1 ?
27 PsiBlast_CBE 78.07100% -93 - C1 -1CSB 3.6 ?
29 PsiBlast_CBE 74.9087% -90 - C1 -1SP4 4.1 ?
30 PsiBlast_CBE 11.65100% -39 - C1 -2IPP 2.7 ?
31 PsiBlast_CBE 11.44100% -40 - C1 -1CSB 3.0
33 PsiBlast_CBE 10.5893% -37 - C1 -1SP4 3.9
32 PsiBlast_CBE 10.25100% -32 - C1 -1CSB 3.1 CATB_HUMAN