@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF08127_CATB_RAT: (2014-10-14 )
MWWSLIPLSCLLALTSAHDKPSSHPLSDDMINYINKQNTTWQAGRNFYNVDISYLKKLCGTVLGGPNLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILRGENHCGIESEIVAGIPRTQQYWGRF

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

APD_A_5(1GMY)
?
[Raw transfer]



78A_A_3(2DCD)
CATB_BOVIN
[Raw transfer]



74M_A_3(2DC9)
CATB_BOVIN
[Raw transfer]



76V_A_3(2DCB)
CATB_BOVIN
[Raw transfer]



042_A_3(2DC7)
CATB_BOVIN
[Raw transfer]



75V_A_3(2DCA)
CATB_BOVIN
[Raw transfer]



59A_A_3(2DC8)
CATB_BOVIN
[Raw transfer]



77B_A_3(2DCC)
CATB_BOVIN
[Raw transfer]



73V_A_3(2DC6)
?
[Raw transfer]



E6C_A_2(1ITO)
CATB_BOVIN
[Raw transfer]



APD_C_11(1GMY)
?
[Raw transfer]



APD_A_5(1GMY)
?
[Raw transfer]



EP2_B_3(1SP4)
?
[Raw transfer]



HNQ_A_4(3AI8)
CATB_HUMAN
[Raw transfer]



HNQ_B_3(3AI8)
?
[Raw transfer]



CHAIN_C_3(1CSB)
CATB_HUMAN
[Raw transfer]
-
CHAIN_F_6(1CSB)

[Raw transfer]
-
PHQ_C_3(1THE)
CATB_RAT
[Raw transfer]



AEM_C_10(1GMY)
?
[Raw transfer]



PHQ_D_4(1THE)
CATB_RAT
[Raw transfer]



AEM_A_4(1GMY)
?
[Raw transfer]



AEM_B_7(1GMY)
?
[Raw transfer]



EOH_C_7(1CSB)
?
[Raw transfer]



PYS_B_4(1CTE)
CATB_RAT
[Raw transfer]



CHAIN_F_6(1CSB)
?
[Raw transfer]
-
EP2_B_3(1SP4)

[Raw transfer]



CHAIN_C_3(1CSB)
?
[Raw transfer]
-
PYS_A_3(1CTE)
CATB_RAT
[Raw transfer]



EOH_F_8(1CSB)
?
[Raw transfer]



PYS_A_3(2IPP)
?
[Raw transfer]



DFA_C_12(1GMY)
?
[Raw transfer]



PHQ_D_4(1THE)
CATB_RAT
[Raw transfer]



DFA_A_6(1GMY)
?
[Raw transfer]



PHQ_C_3(1THE)
CATB_RAT
[Raw transfer]



DFA_A_6(1GMY)
?
[Raw transfer]



PYS_A_3(2IPP)
?
[Raw transfer]



EOH_F_8(1CSB)

[Raw transfer]



EOH_C_7(1CSB)
CATB_HUMAN
[Raw transfer]
6 PsiBlast_PDB 98.4899% -98 - C1 -1THE 5.5 CATB_RAT
22 PsiBlast_CBE 97.6999% -94 - C1 -1CTE 2.4 CATB_RAT
21 PsiBlast_CBE 97.5799% -93 - C1 -1THE 6.0 CATB_RAT
7 PsiBlast_PDB 96.6599% -88 - C1 -1CTE 1.6 CATB_RAT
14 PsiBlast_PDB 92.7683% -94 - C1 -2DC6 4.7 ?
26 PsiBlast_CBE 92.5383% -95 - C1 -2DCD 5.2 CATB_BOVIN
13 PsiBlast_PDB 92.4883% -93 - C1 -1ITO 3.3 CATB_BOVIN
19 PsiBlast_PDB 92.3883% -95 - C1 -2DCB 5.5 CATB_BOVIN
23 PsiBlast_CBE 92.3182% -92 - C1 -1GMY 3.5 ?
15 PsiBlast_PDB 92.2783% -94 - C1 -2DC7 4.9 CATB_BOVIN
17 PsiBlast_PDB 92.2083% -93 - C1 -2DC9 4.6 CATB_BOVIN
16 PsiBlast_PDB 92.1983% -93 - C1 -2DC8 3.1 CATB_BOVIN
25 PsiBlast_CBE 92.0883% -89 - C1 -3AI8 3.5 CATB_HUMAN
10 PsiBlast_PDB 91.9582% -92 - C1 -1GMY 3.5 ?
20 PsiBlast_PDB 91.8483% -92 - C1 -2DCC 4.2 CATB_BOVIN
11 PsiBlast_PDB 91.5683% -89 - C1 -3AI8 3.5 ?
18 PsiBlast_PDB 91.4583% -91 - C1 -2DCA 4.6 CATB_BOVIN
24 PsiBlast_CBE 90.9982% -92 * C1 *1GMY 3.4 ?
31 PsiBlast_CBE 75.9683% -94 - C1 -1SP4 4.1 ?
28 PsiBlast_CBE 74.7583% -97 - C1 -2IPP 3.5 ?
29 PsiBlast_CBE 74.4083% -96 - C1 -1CSB 3.6 ?
30 PsiBlast_CBE 74.2883% -94 - C1 -1CSB 4.1 ?
32 PsiBlast_CBE 15.2689% -56 - C1 -1SP4 3.9
33 PsiBlast_CBE 14.6587% -52 - C1 -2IPP 2.7 ?
34 PsiBlast_CBE 13.3787% -47 - C1 -1CSB 3.0
35 PsiBlast_CBE 13.0987% -46 - C1 -1CSB 3.1 CATB_HUMAN