@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF08715_R1AB_CVHSA: (2014-10-16 )
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVVVV

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AZP_A_3(2A5K)

[Raw transfer]



AZP_A_2(2GTB)
R1AB_CVHSA
[Raw transfer]



G83_A_2(3TNS)

[Raw transfer]



ZU3_A_2(2ZU4)

[Raw transfer]



G82_A_3(3TIU)

[Raw transfer]



CY6_A_2(2ALV)
?
[Raw transfer]



ZU5_A_2(2ZU5)

[Raw transfer]



G85_A_2(3TNT)

[Raw transfer]



3IH_B_6(3IWM)

[Raw transfer]



AZP_B_4(2A5K)
?
[Raw transfer]



G75_A_2(3SZN)
R1A_CVHSA
[Raw transfer]



3IH_C_7(3IWM)
?
[Raw transfer]



G81_A_2(3TIT)

[Raw transfer]



3IH_A_5(3IWM)
R1A_CVHSA
[Raw transfer]



S89_A_2(3SN8)
R1A_CVHSA
[Raw transfer]



0EN_A_2(3V3M)

[Raw transfer]



3IH_D_8(3IWM)
?
[Raw transfer]



CHAIN_H_2(3SNC)

[Raw transfer]
-
CHAIN_H_2(3SNE)

[Raw transfer]
-
CHAIN_H_2(3SNB)

[Raw transfer]
-
CHAIN_C_3(3SND)

[Raw transfer]
-
CHAIN_D_4(3SND)
?
[Raw transfer]
-
DMS_A_4(2Z9L)

[Raw transfer]



DMS_A_4(2Z9K)

[Raw transfer]



CHAIN_E_3(3VB5)
R1A_CVHSA
[Raw transfer]
-
CHAIN_E_3(3VB7)
R1A_CVHSA
[Raw transfer]
-
BNZ_A_3(2Z9G)
R1AB_CVHSA
[Raw transfer]



CHAIN_F_4(3VB6)

[Raw transfer]
-
CHAIN_E_3(3VB6)
R1A_CVHSA
[Raw transfer]
-
CHAIN_F_4(3VB5)

[Raw transfer]
-
DOZ_A_7(2Z9K)

[Raw transfer]



DOZ_B_8(2Z9K)
?
[Raw transfer]



CHAIN_E_3(3VB4)

[Raw transfer]
-
DTZ_A_8(2Z9J)

[Raw transfer]



DTZ_B_7(2Z9J)
?
[Raw transfer]



DAZ_A_7(2Z9L)

[Raw transfer]



DAZ_B_8(2Z9L)
?
[Raw transfer]



TLD_A_3(2Z94)
?
[Raw transfer]



CHAIN_B_2(2Z3C)
R1A_CVHSA
[Raw transfer]
-
CHAIN_I_2(2Z3D)
R1A_CVHSA
[Raw transfer]
-
CHAIN_I_2(2Z3E)

[Raw transfer]
-
35 PsiBlast_CBE 95.40100%-145 - C1 -2Z9L 3.1
37 PsiBlast_CBE 79.70100%-145 - C1 -2Z9K 3.2
42 PsiBlast_CBE 79.64100%-144 - C1 -2Z3E 8.3
23 PsiBlast_CBE 79.32100%-144 - C1 -3SND 3.0 ?
6 PsiBlast_CBE 77.91100%-144 - C1 -3VB7 -
25 PsiBlast_CBE 77.62100%-145 - C1 -3SNC 3.7
41 PsiBlast_CBE 77.00100%-143 - C1 -2Z94 2.8 ?
2 PsiBlast_PDB 76.87100%-144 - C1 -2A5K 8.4
38 PsiBlast_CBE 75.70100%-143 - C1 -2Z9J 3.1 ?
32 PsiBlast_CBE 75.45100%-142 - C1 -2ZU5 8.4
8 PsiBlast_CBE 75.31100%-144 - C1 -3VB6 5.4
12 PsiBlast_CBE 74.53100%-143 - C1 -3VB4 - ?
26 PsiBlast_CBE 73.96100%-143 - C1 -3SNB 4.8
24 PsiBlast_CBE 73.46100%-141 - C1 -3SND 3.0
17 PsiBlast_CBE 72.92100%-142 - C1 -3TNT 8.4
18 PsiBlast_CBE 71.99100%-142 - C1 -3TNS 8.7
36 PsiBlast_CBE 71.68100%-141 - C1 -2Z9K 3.1 ?
10 PsiBlast_CBE 70.83100%-141 - C1 -3VB5 6.8
22 PsiBlast_CBE 70.31100%-142 - C1 -3SNE 4.8
44 PsiBlast_CBE 70.20100%-141 - C1 -2Z3C 7.2 R1A_CVHSA
40 PsiBlast_CBE 70.17100%-141 - C1 -2Z9G 2.4 R1AB_CVHSA
43 PsiBlast_CBE 70.10100%-141 - C1 -2Z3D 4.1 R1A_CVHSA
1 PsiBlast_PDB 69.19100%-141 - C1 -2ALV 6.3 ?
21 PsiBlast_CBE 67.75100%-140 - C1 -3SZN 5.9 R1A_CVHSA
27 PsiBlast_CBE 67.06100%-141 - C1 -3SN8 6.4 R1A_CVHSA
20 PsiBlast_CBE 66.94100%-140 - C1 -3TIT 5.4
34 PsiBlast_CBE 64.97100%-144 - C1 -2Z9L 3.0 ?
33 PsiBlast_CBE 64.68100%-140 - C1 -2ZU4 7.4
16 PsiBlast_CBE 61.52100%-139 - C1 -3V3M 7.6
19 PsiBlast_CBE 59.72100%-138 - C1 -3TIU 8.0
4 PsiBlast_PDB 59.51100%-144 - C1 -2GTB 9.3 R1AB_CVHSA (first)
39 PsiBlast_CBE 59.00100%-139 * C1 *2Z9J 3.1
13 PsiBlast_CBE 57.11100%-141 - C1 -3VB4 7.0
7 PsiBlast_CBE 57.03100%-140 - C1 -3VB7 5.1 R1A_CVHSA
11 PsiBlast_CBE 56.11100%-140 - C1 -3VB5 6.8 R1A_CVHSA
5 PsiBlast_CBE 55.68100%-143 - C1 -2A5K 8.7 ?
9 PsiBlast_CBE 55.15100%-141 - C1 -3VB6 4.6 R1A_CVHSA
31 PsiBlast_CBE 24.51100%-142 - C1 -3IWM 6.0 R1A_CVHSA
30 PsiBlast_CBE 24.34100%-140 - C1 -3IWM 7.6
29 PsiBlast_CBE 19.51100%-141 - C1 -3IWM 7.1 ?
28 PsiBlast_CBE 15.54100%-140 - C1 -3IWM 6.3 ?