@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF10613_GRIA1_MOUSE: (2014-10-17 )
MPYIFAFFCTGFLGAVVGANFPNNIQIGGLFPNQQSQEHAAFRFALSQLTEPPKLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDARDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAATDAQAGGDNSSVQNRTYIVTTILEDPYVMLKKNANQFEGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRGPVNLAVLKLSEQGVLDKLKSKWWYDKGECGSKDSGSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYKSRSESKRMKGFCLIPQQSINEAIRTSTLPRNSGAGASGGSGSGENGRVVSQDFPKSMQSIPCMSHSSGMPLGATGL

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_10(4FAT)

[Raw transfer]




DMS_A_7(3O6H)

[Raw transfer]




O27_A_6(3O6G)

[Raw transfer]




O30_A_2(3O2A)

[Raw transfer]




O29_A_9(3O29)

[Raw transfer]




G69_A_13(3PMW)

[Raw transfer]




O26_A_3(3O6I)

[Raw transfer]




GOL_A_10(3H6T)

[Raw transfer]




GOL_A_10(3H6T)
GRIA2_RAT
[Raw transfer]




LY7_A_7(3KGC)

[Raw transfer]




RN8_B_7(3RN8)
GRIA2_HUMAN
[Raw transfer]




1NG_A_5(2XXH)

[Raw transfer]




1NF_A_5(2XX9)

[Raw transfer]




JAC_A_7(2XXI)

[Raw transfer]




O25_A_6(3O6H)

[Raw transfer]




BHY_A_11(3BBR)
GRIA2_RAT
[Raw transfer]




RN8_A_5(3RN8)

[Raw transfer]




496_A_3(4FAT)

[Raw transfer]




RNN_B_7(3RNN)
GRIA2_HUMAN
[Raw transfer]




RNN_A_4(3RNN)

[Raw transfer]




NS6_A_4(3H6V)
GRIA2_RAT
[Raw transfer]




557_A_8(3PMV)

[Raw transfer]




NS7_A_4(3H6W)
GRIA2_RAT
[Raw transfer]




CYZ_C_25(3H6T)
GRIA2_RAT
[Raw transfer]




NS7_B_8(3H6W)

[Raw transfer]




BHY_A_11(3BBR)

[Raw transfer]




NS6_A_4(3H6V)

[Raw transfer]




NS6_B_10(3H6V)
GRIA2_RAT
[Raw transfer]




LY7_A_7(3KGC)
GRIA2_RAT
[Raw transfer]




NS3_A_3(3H6U)

[Raw transfer]




CYZ_A_5(3H6T)

[Raw transfer]




CYZ_A_5(3H6T)
GRIA2_RAT
[Raw transfer]




CYZ_B_14(3H6T)
GRIA2_RAT
[Raw transfer]




EDO_A_8(3O6H)

[Raw transfer]




46 PsiBlast_CBE 15.8689% -41 - C1 -3H6V 3.7 GRIA2_RAT
51 PsiBlast_CBE 15.8489% -42 - C1 -3BBR 2.5
17 PsiBlast_PDB 15.8390% -37 - C1 -3O2A 3.0
47 PsiBlast_CBE 15.7589% -41 - C1 -3H6U 2.7
36 PsiBlast_CBE 15.5790% -38 - C1 -3PMW 2.7
59 PsiBlast_CBE 15.4989% -38 - C1 -2XX9 3.0
18 PsiBlast_PDB 15.4490% -38 - C1 -3O6G 3.0
20 PsiBlast_PDB 15.3890% -40 - C1 -3O6I 2.8
15 PsiBlast_PDB 15.3091% -37 - C1 -3O28 -
34 PsiBlast_CBE 15.2390% -37 - C1 -4FAT 3.0
37 PsiBlast_CBE 15.2290% -38 - C1 -3PMV 2.7
56 PsiBlast_CBE 15.1289% -39 - C1 -2XXH 3.9
30 PsiBlast_CBE 15.0086% -37 - C1 -3RN8 3.1 GRIA2_HUMAN
19 PsiBlast_PDB 14.9890% -35 - C1 -3O6H 2.9
53 PsiBlast_CBE 14.8389% -38 - C1 -2XXI 3.4
41 PsiBlast_CBE 14.7489% -37 - C1 -3KGC 3.6
45 PsiBlast_CBE 14.7089% -41 - C1 -3H6V 3.7
29 PsiBlast_CBE 14.6386% -40 - C1 -3RN8 3.2
49 PsiBlast_CBE 14.4989% -39 - C1 -3H6T 3.2 GRIA2_RAT
28 PsiBlast_CBE 14.4186% -36 - C1 -3RNN 2.6 GRIA2_HUMAN
52 PsiBlast_CBE 14.3389% -44 - C1 -3BBR 2.6 GRIA2_RAT
50 PsiBlast_CBE 14.2689% -34 - C1 -3H6T 3.3 GRIA2_RAT
44 PsiBlast_CBE 14.2489% -33 - C1 -3H6W 3.1 GRIA2_RAT
16 PsiBlast_PDB 14.1590% -38 * C1 *3O29 2.8
48 PsiBlast_CBE 14.1189% -35 - C1 -3H6T 3.5
27 PsiBlast_CBE 14.0986% -42 - C1 -3RNN 2.7
42 PsiBlast_CBE 13.5989% -40 - C1 -3KGC 3.1 GRIA2_RAT
43 PsiBlast_CBE 13.5389% -33 - C1 -3H6W 3.4