@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF10613_GRIA2_RAT: (2014-10-17 )
MQKIMHISVLLSPVLWGLIFGVSSNSIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNPQNINPSSSQNSQNFATYKEGYNVYGIESVKI

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CE2_B_6(1NNP)

[Raw transfer]




G8M_A_3(4G8M)
GRIA2_RAT
[Raw transfer]




3ZA_A_2(4IGT)

[Raw transfer]




S2P_B_9(3BFT)
GRIA2_RAT
[Raw transfer]




GLU_A_4(3RN8)
GRIA2_HUMAN
[Raw transfer]




GLU_B_8(3RNN)
GRIA2_HUMAN
[Raw transfer]




GLU_C_13(3RN8)

[Raw transfer]




GLU_A_5(3RNN)
GRIA2_HUMAN
[Raw transfer]




G8M_B_10(4G8M)

[Raw transfer]




GLU_B_6(3RN8)
GRIA2_HUMAN
[Raw transfer]




CE2_A_5(1NNK)

[Raw transfer]




S2P_A_4(3BFT)
GRIA2_RAT
[Raw transfer]




IBC_A_4(1WVJ)

[Raw transfer]




S2P_C_15(3BFT)

[Raw transfer]




CE2_A_5(1NNP)
GRIA2_RAT
[Raw transfer]




GLU_A_9(1FTJ)
GRIA2_RAT
[Raw transfer]




GLU_C_11(3RNN)

[Raw transfer]




GOL_A_9(4G8M)
GRIA2_RAT
[Raw transfer]




GOL_B_16(4G8M)

[Raw transfer]




R2P_C_7(3BFU)
GRIA2_RAT
[Raw transfer]




R2P_D_8(3BFU)

[Raw transfer]




R2P_B_6(3BFU)
GRIA2_RAT
[Raw transfer]




M1L_A_8(2CMO)
GRIA2_RAT
[Raw transfer]




GLU_F_6(2P2A)
GRIA2_RAT
[Raw transfer]




R2P_A_5(3BFU)
GRIA2_RAT
[Raw transfer]




IKM_B_16(4ISU)
GRIA2_RAT
[Raw transfer]




MES_C_15(4H8J)
GRIA2_RAT
[Raw transfer]




GLU_B_7(2CMO)

[Raw transfer]




IKM_A_5(4ISU)
GRIA2_RAT
[Raw transfer]




KAI_B_2(1FW0)

[Raw transfer]




EDO_D_23(4H8J)

[Raw transfer]




MES_A_5(4H8J)
GRIA2_RAT
[Raw transfer]




EDO_B_14(4H8J)
GRIA2_RAT
[Raw transfer]




28 PsiBlast_CBE 13.5399% -45 - C1 -3RNN 3.0
49 PsiBlast_CBE 13.2899% -41 - C1 -3BFU 2.8 GRIA2_RAT
11 PsiBlast_PDB 13.2199% -44 * C1 *3RN8 2.3 GRIA2_HUMAN
54 PsiBlast_CBE 13.0899% -46 - C1 -2P2A 2.9 GRIA2_RAT
26 PsiBlast_CBE 13.0399% -43 - C1 -3RN8 3.1
39 PsiBlast_CBE 12.8399% -42 - C1 -4G8M 3.2 GRIA2_RAT
13 PsiBlast_PDB 12.7099% -39 - C1 -4H8J 2.7 GRIA2_RAT
38 PsiBlast_CBE 12.6699% -42 - C1 -4G8M 4.9
46 PsiBlast_CBE 12.6399% -40 - C1 -3BFU 3.8
68 PsiBlast_CBE 12.5899% -43 - C1 -1NNP 3.6
48 PsiBlast_CBE 12.5899% -38 - C1 -3BFU 2.7 GRIA2_RAT
12 PsiBlast_PDB 12.5199% -40 - C1 -3RNN 2.5 GRIA2_HUMAN
27 PsiBlast_CBE 12.3999% -41 - C1 -3RN8 3.2 GRIA2_HUMAN
15 PsiBlast_PDB 12.3999% -41 - C1 -1FTJ 2.3 GRIA2_RAT
31 PsiBlast_CBE 12.3299% -38 - C1 -4H8J 2.8 GRIA2_RAT
29 PsiBlast_CBE 12.0999% -39 - C1 -3RNN 2.3 GRIA2_HUMAN
66 PsiBlast_CBE 12.0599% -38 - C1 -1WVJ 3.8
52 PsiBlast_CBE 12.0499% -40 - C1 -3BFT 2.8 GRIA2_RAT
37 PsiBlast_CBE 12.0499% -37 - C1 -4IGT 2.9
35 PsiBlast_CBE 12.0299% -39 - C1 -4ISU 4.1 GRIA2_RAT
32 PsiBlast_CBE 12.0099% -38 - C1 -4H8J 3.4 GRIA2_RAT
70 PsiBlast_CBE 11.9899% -42 - C1 -1NNK 3.7
50 PsiBlast_CBE 11.9499% -40 - C1 -3BFT 2.6
69 PsiBlast_CBE 11.9199% -40 - C1 -1NNP 3.7 GRIA2_RAT
47 PsiBlast_CBE 11.9099% -38 - C1 -3BFU 3.9 GRIA2_RAT
51 PsiBlast_CBE 11.7299% -39 - C1 -3BFT 2.7 GRIA2_RAT
30 PsiBlast_CBE 11.6299% -36 - C1 -4H8J 3.5
56 PsiBlast_CBE 11.4199% -37 - C1 -2CMO 3.2 GRIA2_RAT
36 PsiBlast_CBE 11.3799% -36 - C1 -4ISU 3.9 GRIA2_RAT
55 PsiBlast_CBE 11.3299% -40 - C1 -2CMO 2.9
14 PsiBlast_PDB 9.9499% -33 - C1 -1FW0 2.7