@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF10613_GRIK1_HUMAN: (2014-10-17 )
MEHGTLLAQPGLWTRDTSWALLYFLCYILPQTAPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDNKDLFYINLYPDYAAISRAILDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPSGNKDAKPLLKEMKKGKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGHITFNKTNGLRKDFDLDIISLKEEGTEKAAGEVSKHLYKVWKKIGIWNSNSGLNMTDSNKDKSSNITDSLANRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQTALVRNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDNKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFIYKSRKNNDIEQAFCFFYGLQCKQTHPTNSTSGTTLSTDLECGKLIREERGIRKQSSVHTV

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

9DX_B_13(3FVN)

[Raw transfer]



9DX_A_7(3FVN)
GRIK1_HUMAN
[Raw transfer]



NDZ_A_10(3FV2)
GRIK1_HUMAN
[Raw transfer]



8EP_A_7(3FVO)
GRIK1_HUMAN
[Raw transfer]



NDZ_B_16(3FV2)

[Raw transfer]



8DX_A_8(3FVK)
GRIK1_HUMAN
[Raw transfer]



8EP_B_16(3FVO)

[Raw transfer]



DYH_C_13(3GBA)
GRIK1_RAT
[Raw transfer]



DYH_A_2(2ZNT)

[Raw transfer]



DYH_A_3(3FV1)
GRIK1_HUMAN
[Raw transfer]



NDZ_A_2(2ZNU)

[Raw transfer]



DYH_B_11(3FV1)

[Raw transfer]



DYH_D_15(3GBA)

[Raw transfer]



DYH_A_5(3GBA)
GRIK1_RAT
[Raw transfer]



8DX_B_13(3FVK)

[Raw transfer]



DYH_B_9(3GBA)
GRIK1_RAT
[Raw transfer]



MS8_A_3(3GBB)
GRIK1_RAT
[Raw transfer]



MS8_B_14(3FVG)

[Raw transfer]



MS8_B_4(3GBB)

[Raw transfer]



MS8_A_6(3FVG)
GRIK1_HUMAN
[Raw transfer]



GOL_A_3(3FVO)
GRIK1_HUMAN
[Raw transfer]



KAI_A_17(3C35)
GRIK1_RAT
[Raw transfer]



IBC_B_6(2WKY)

[Raw transfer]



KAI_A_3(4E0X)
GRIK1_RAT
[Raw transfer]



KAI_A_9(3C32)
GRIK1_RAT
[Raw transfer]



GOL_B_14(3C32)

[Raw transfer]



KAI_B_11(3C33)

[Raw transfer]



KAI_B_10(3C32)

[Raw transfer]



KAI_B_8(4E0X)

[Raw transfer]



KAI_B_11(3C31)

[Raw transfer]



KAI_A_10(3C31)
GRIK1_RAT
[Raw transfer]



KAI_B_14(3C34)

[Raw transfer]



KAI_B_10(3C36)

[Raw transfer]



KAI_A_10(3C33)
GRIK1_RAT
[Raw transfer]



KAI_B_18(3C35)

[Raw transfer]



KAI_A_13(3C34)
GRIK1_RAT
[Raw transfer]



KAI_A_9(3C36)
GRIK1_RAT
[Raw transfer]



GLU_B_6(3FUZ)

[Raw transfer]



GOL_B_15(3C33)

[Raw transfer]



GLU_A_2(2ZNS)

[Raw transfer]



GLU_A_3(3FUZ)
GRIK1_HUMAN
[Raw transfer]



GOL_A_11(3C32)
GRIK1_RAT
[Raw transfer]



GOL_A_12(3C31)
GRIK1_RAT
[Raw transfer]



GOL_A_19(3C35)
GRIK1_RAT
[Raw transfer]



GOL_B_12(3C32)

[Raw transfer]



GOL_B_17(3C34)

[Raw transfer]



GOL_A_15(3C34)
GRIK1_RAT
[Raw transfer]



GOL_A_11(3C36)
GRIK1_RAT
[Raw transfer]



GOL_A_12(3C33)
GRIK1_RAT
[Raw transfer]



LY5_A_7(2QS4)
GRIK1_RAT
[Raw transfer]



LY5_D_10(2QS4)

[Raw transfer]



LY5_C_9(2QS4)
GRIK1_RAT
[Raw transfer]



GLU_J_10(1YCJ)

[Raw transfer]



LY5_B_8(2QS4)
GRIK1_RAT
[Raw transfer]



DOQ_A_3(2PBW)
GRIK1_RAT
[Raw transfer]



GLU_B_2(1TXF)

[Raw transfer]



GLU_J_10(1YCJ)
GRIK1_RAT
[Raw transfer]



DOQ_B_4(2PBW)

[Raw transfer]



BME_A_3(2ZNU)

[Raw transfer]
34 PsiBlast_CBE 22.3696% -48 - C1 -3C35 3.4
42 PsiBlast_CBE 22.2496% -49 - C1 -3C31 3.5
11 PsiBlast_PDB 21.9297% -49 - C1 -3FUZ 2.2 GRIK1_HUMAN
30 PsiBlast_CBE 21.8997% -46 - C1 -3FUZ 2.7
36 PsiBlast_CBE 21.7896% -47 - C1 -3C34 3.3
12 PsiBlast_PDB 21.7797% -46 - C1 -3FV1 4.3 GRIK1_HUMAN
38 PsiBlast_CBE 21.7196% -48 - C1 -3C33 3.5
26 PsiBlast_CBE 21.5997% -46 - C1 -3FVK 3.8
13 PsiBlast_PDB 21.5697% -47 - C1 -3FV2 4.1 GRIK1_HUMAN
15 PsiBlast_PDB 21.5397% -49 - C1 -3FVK 3.7 GRIK1_HUMAN
17 PsiBlast_PDB 21.5197% -45 - C1 -3FVO 4.0 GRIK1_HUMAN
24 PsiBlast_CBE 21.4697% -48 - C1 -3FVO 4.0
25 PsiBlast_CBE 21.4297% -45 - C1 -3FVN 3.5
27 PsiBlast_CBE 21.3597% -41 - C1 -3FVG 3.1
28 PsiBlast_CBE 21.2697% -47 - C1 -3FV2 3.9
40 PsiBlast_CBE 21.2396% -42 * C1 *3C32 3.5
32 PsiBlast_CBE 21.2296% -43 - C1 -3C36 3.5
14 PsiBlast_PDB 21.1397% -47 - C1 -3FVG 3.1 GRIK1_HUMAN
16 PsiBlast_PDB 21.0797% -48 - C1 -3FVN 3.6 GRIK1_HUMAN
35 PsiBlast_CBE 20.9596% -41 - C1 -3C35 2.7 GRIK1_RAT
39 PsiBlast_CBE 20.8896% -41 - C1 -3C33 3.5 GRIK1_RAT
20 PsiBlast_PDB 20.8596% -42 - C1 -3C31 3.5 GRIK1_RAT
29 PsiBlast_CBE 20.6697% -43 - C1 -3FV1 4.4
51 PsiBlast_CBE 20.6496% -42 - C1 -3GBA 4.5
43 PsiBlast_CBE 20.6096% -45 - C1 -4E0X 2.6
50 PsiBlast_CBE 20.5996% -47 - C1 -3GBB 2.9 GRIK1_RAT
54 PsiBlast_CBE 20.4796% -41 - C1 -3GBA 4.4 GRIK1_RAT
9 PsiBlast_PDB 20.4697% -39 - C1 -2ZNT 4.3
57 PsiBlast_CBE 20.4296% -45 - C1 -1YCJ 2.5
31 PsiBlast_CBE 20.3896% -43 - C1 -2WKY 3.5
33 PsiBlast_CBE 20.3396% -40 - C1 -3C36 3.5 GRIK1_RAT
37 PsiBlast_CBE 20.2996% -38 - C1 -3C34 3.4 GRIK1_RAT
60 PsiBlast_CBE 20.2896% -42 - C1 -2QS4 3.7
49 PsiBlast_CBE 20.2796% -40 - C1 -3GBB 2.9
41 PsiBlast_CBE 20.2796% -39 - C1 -3C32 3.5 GRIK1_RAT
53 PsiBlast_CBE 20.1896% -41 - C1 -3GBA 4.2 GRIK1_RAT
52 PsiBlast_CBE 20.1896% -42 - C1 -3GBA 4.5 GRIK1_RAT
55 PsiBlast_CBE 20.1796% -39 - C1 -2PBW 3.0
62 PsiBlast_CBE 19.8796% -40 - C1 -2QS4 3.3 GRIK1_RAT
63 PsiBlast_CBE 19.8596% -41 - C1 -2QS4 3.1 GRIK1_RAT
10 PsiBlast_PDB 19.7797% -35 - C1 -2ZNU 4.1
8 PsiBlast_PDB 19.6897% -39 - C1 -2ZNS 4.0
44 PsiBlast_CBE 19.3196% -39 - C1 -4E0X 2.5 GRIK1_RAT
19 PsiBlast_PDB 18.6496% -39 - C1 -1TXF 2.8
61 PsiBlast_CBE 18.5996% -39 - C1 -2QS4 3.7 GRIK1_RAT
56 PsiBlast_CBE 18.1796% -36 - C1 -2PBW 3.4 GRIK1_RAT
58 PsiBlast_CBE 17.8196% -36 - C1 -1YCJ 2.5 GRIK1_RAT