@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF10613_GRIK1_RAT: (2014-10-17 )
MERSTVLIQPGLWTRDTSWTLLYFLCYILPQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTSINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRWKHPSVDSRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIKIKIRQLPPANKDAKPLLKEMKKSKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYFFTTLDLFALDLELYRYSGVNMTGFRKLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTEAALMYDAVYMVAIASHRASQLTVSSLQCHRHKPCALGPRFMNLIKEARWDGLTGRITFNKTDGLRKDFDLDIISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSNNITDSLANRTLIVTTILEEPYVMYRKSDKPLYGNDRFEAYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFLYKSRKNNDVEQKGKSSRLRFYFRNKVRFHGSKKESLGVEKCLSFNAIMEELGISLKNQKKLKKKSRTKGKSSFTSILTCHQRRTQRKETVA

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8EP_B_16(3FVO)

[Raw transfer]



8EP_A_7(3FVO)
GRIK1_HUMAN
[Raw transfer]



DYH_B_9(3GBA)
GRIK1_RAT
[Raw transfer]



DYH_A_5(3GBA)
GRIK1_RAT
[Raw transfer]



9DX_B_13(3FVN)

[Raw transfer]



9DX_A_7(3FVN)
GRIK1_HUMAN
[Raw transfer]



8DX_A_8(3FVK)
GRIK1_HUMAN
[Raw transfer]



DYH_C_13(3GBA)
GRIK1_RAT
[Raw transfer]



DYH_D_15(3GBA)

[Raw transfer]



8DX_B_13(3FVK)

[Raw transfer]



UBE_B_8(2QS3)

[Raw transfer]



KAI_A_3(4E0X)
GRIK1_RAT
[Raw transfer]



MS8_B_4(3GBB)

[Raw transfer]



MS8_A_3(3GBB)
GRIK1_RAT
[Raw transfer]



UBE_A_6(2QS3)
GRIK1_RAT
[Raw transfer]



KAI_A_17(3C35)
GRIK1_RAT
[Raw transfer]



UB1_B_8(2QS1)

[Raw transfer]



KAI_B_8(4E0X)

[Raw transfer]



GOL_A_3(3FVO)
GRIK1_HUMAN
[Raw transfer]



KAI_B_18(3C35)

[Raw transfer]



KAI_B_10(3C36)

[Raw transfer]



KAI_A_9(3C32)
GRIK1_RAT
[Raw transfer]



KAI_A_9(3C36)
GRIK1_RAT
[Raw transfer]



KAI_B_14(3C34)

[Raw transfer]



KAI_B_11(3C31)

[Raw transfer]



IBC_B_6(2WKY)

[Raw transfer]



KAI_A_13(3C34)
GRIK1_RAT
[Raw transfer]



KAI_A_10(3C33)
GRIK1_RAT
[Raw transfer]



KAI_A_10(3C31)
GRIK1_RAT
[Raw transfer]



KAI_B_10(3C32)

[Raw transfer]



KAI_B_11(3C33)

[Raw transfer]



UB1_A_6(2QS1)
GRIK1_RAT
[Raw transfer]



UBF_A_6(2QS2)
GRIK1_RAT
[Raw transfer]



GLU_A_9(2F36)

[Raw transfer]



UBF_B_8(2QS2)

[Raw transfer]



GLU_A_9(2F36)
GRIK1_RAT
[Raw transfer]



GOL_A_19(3C35)
GRIK1_RAT
[Raw transfer]



GOL_A_11(3C32)
GRIK1_RAT
[Raw transfer]



LY5_A_7(2QS4)
GRIK1_RAT
[Raw transfer]



GLU_A_9(2F36)
GRIK1_RAT
[Raw transfer]



GOL_B_12(3C32)

[Raw transfer]



GOL_A_12(3C31)
GRIK1_RAT
[Raw transfer]



GOL_A_15(3C34)
GRIK1_RAT
[Raw transfer]



GOL_A_11(3C36)
GRIK1_RAT
[Raw transfer]



GOL_A_12(3C33)
GRIK1_RAT
[Raw transfer]



GOL_B_17(3C34)

[Raw transfer]



LY5_C_9(2QS4)
GRIK1_RAT
[Raw transfer]



LY5_D_10(2QS4)

[Raw transfer]



GLU_A_9(2F36)
GRIK1_RAT
[Raw transfer]



LY5_B_8(2QS4)
GRIK1_RAT
[Raw transfer]



DOQ_A_3(2PBW)
GRIK1_RAT
[Raw transfer]



GLU_J_10(1YCJ)

[Raw transfer]



GLU_B_2(1TXF)

[Raw transfer]



DOQ_B_4(2PBW)

[Raw transfer]



GLU_J_10(1YCJ)
GRIK1_RAT
[Raw transfer]
30 PsiBlast_CBE 22.0297% -45 - C1 -3C31 3.5
26 PsiBlast_CBE 22.0297% -43 - C1 -3C35 3.4
27 PsiBlast_CBE 21.7497% -43 - C1 -3C34 3.3
28 PsiBlast_CBE 21.5797% -44 - C1 -3C33 3.5
68 PsiBlast_CBE 21.1696% -45 - C1 -3FVK 3.7 GRIK1_HUMAN
64 PsiBlast_CBE 21.1096% -42 - C1 -3FVO 4.0 GRIK1_HUMAN
25 PsiBlast_CBE 21.0397% -39 - C1 -3C36 3.5
67 PsiBlast_CBE 21.0096% -42 - C1 -3FVK 3.8
63 PsiBlast_CBE 21.0096% -44 - C1 -3FVO 4.0
29 PsiBlast_CBE 20.9497% -38 - C1 -3C32 3.5
56 PsiBlast_CBE 20.9097% -42 - C1 -2F36 2.9 GRIK1_RAT
14 PsiBlast_PDB 20.8697% -37 - C1 -3C35 2.7 GRIK1_RAT
20 PsiBlast_PDB 20.8297% -43 - C1 -3GBB 2.9 GRIK1_RAT
12 PsiBlast_PDB 20.7497% -37 - C1 -3C33 3.5 GRIK1_RAT
65 PsiBlast_CBE 20.6896% -41 - C1 -3FVN 3.5
38 PsiBlast_CBE 20.6497% -38 - C1 -3GBA 4.5
51 PsiBlast_CBE 20.6397% -42 - C1 -2QS1 4.5
10 PsiBlast_PDB 20.6397% -38 - C1 -3C31 3.5 GRIK1_RAT
66 PsiBlast_CBE 20.5596% -44 - C1 -3FVN 3.6 GRIK1_HUMAN
19 PsiBlast_PDB 20.4997% -36 - C1 -3GBA 4.4 GRIK1_RAT
31 PsiBlast_CBE 20.4497% -41 - C1 -4E0X 2.6
58 PsiBlast_CBE 20.4197% -38 - C1 -2F36 3.0 GRIK1_RAT
42 PsiBlast_CBE 20.4097% -41 - C1 -1YCJ 2.5
39 PsiBlast_CBE 20.2697% -38 - C1 -3GBA 4.5 GRIK1_RAT
24 PsiBlast_CBE 20.2697% -39 - C1 -2WKY 3.5
47 PsiBlast_CBE 20.2197% -43 - C1 -2QS3 4.1
15 PsiBlast_PDB 20.1897% -36 - C1 -3C36 3.5 GRIK1_RAT
43 PsiBlast_CBE 20.1697% -38 - C1 -2QS4 3.7
11 PsiBlast_PDB 20.0997% -35 - C1 -3C32 3.5 GRIK1_RAT
13 PsiBlast_PDB 20.0797% -34 - C1 -3C34 3.4 GRIK1_RAT
40 PsiBlast_CBE 20.0597% -37 - C1 -3GBA 4.2 GRIK1_RAT
41 PsiBlast_CBE 20.0297% -35 * C1 *2PBW 3.0
52 PsiBlast_CBE 20.0197% -42 - C1 -2QS1 4.5 GRIK1_RAT
48 PsiBlast_CBE 20.0197% -39 - C1 -2QS3 4.2 GRIK1_RAT
49 PsiBlast_CBE 19.9797% -42 - C1 -2QS2 4.0
37 PsiBlast_CBE 19.9797% -35 - C1 -3GBB 2.9
50 PsiBlast_CBE 19.9597% -41 - C1 -2QS2 3.9 GRIK1_RAT
45 PsiBlast_CBE 19.7497% -35 - C1 -2QS4 3.3 GRIK1_RAT
46 PsiBlast_CBE 19.6997% -37 - C1 -2QS4 3.1 GRIK1_RAT
55 PsiBlast_CBE 19.1897% -41 - C1 -2F36 3.0
32 PsiBlast_CBE 19.1497% -35 - C1 -4E0X 2.5 GRIK1_RAT
44 PsiBlast_CBE 18.6797% -34 - C1 -2QS4 3.7 GRIK1_RAT
9 PsiBlast_PDB 18.4697% -34 - C1 -1TXF 2.8
18 PsiBlast_PDB 18.0197% -32 - C1 -2PBW 3.4 GRIK1_RAT
16 PsiBlast_PDB 17.7597% -33 - C1 -1YCJ 2.5 GRIK1_RAT
57 PsiBlast_CBE 17.3697% -29 - C1 -2F36 3.0 GRIK1_RAT