@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF11798_POLK_HUMAN: (2014-10-18 )
MDSTKEKCDSYKDDLLLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKHQQRSIIGFLQAGNQALSATECTLEKTDKDKFVKPLEMSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLKKKMNENLEISENSDDCQILTCPVCFRAQGCISLEALNKHVDECLDGPSISENFKMFSCSHVSATKVNKKENVPASSLCEKQDYEAHPKIKEISSVDCIALVDTIDNSSKAESIDALSNKHSKEECSSLPSKSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQPYLCEVKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNKSFIQELRKDKFNPVNQPKESSRSTGSSSGVQKAVTRTKRPGLMTKYSTSKKIKPNNPKHTLDIFFK

Atome Classification :

(6 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_10(3IN5)
POLK_HUMAN
[Raw transfer]




DCP_A_6(4FS2)
POLI_HUMAN
[Raw transfer]




DGT_A_4(3G6X)
POLI_HUMAN
[Raw transfer]




TTP_A_4(3G6Y)
POLI_HUMAN
[Raw transfer]




TTP_A_4(3OSN)
POLI_HUMAN
[Raw transfer]




DCP_A_6(2DPI)
POLI_HUMAN
[Raw transfer]




XG4_F_7(4IR9)
DPO4_ECOLI
[Raw transfer]




ATP_A_4(3G6V)
POLI_HUMAN
[Raw transfer]




DZ4_F_7(4IRD)
DPO4_ECOLI
[Raw transfer]




DCP_B_7(4IRK)
DPO4_ECOLI
[Raw transfer]




1FZ_F_7(4IR1)
DPO4_ECOLI
[Raw transfer]




0KX_F_7(4IRC)
DPO4_ECOLI
[Raw transfer]




DGT_T_6(3H4D)
POLI_HUMAN
[Raw transfer]




NACID_H_2(4IRC)
DPO4_ECOLI
[Raw transfer]

-

DTP_A_4(3H4B)
POLI_HUMAN
[Raw transfer]




NACID_Q_5(3IN5)
POLK_HUMAN
[Raw transfer]

-

NACID_U_6(3IN5)
POLK_HUMAN
[Raw transfer]

-

21 PsiBlast_CBE 96.10100%-109 - C1 -3IN5 6.5 POLK_HUMAN
2 PsiBlast_PDB 11.0533% -66 - C1 -4IR9 3.7 DPO4_ECOLI
3 PsiBlast_PDB 9.1933% -62 - C1 -4IRC 4.8 DPO4_ECOLI
5 PsiBlast_PDB 8.4333% -66 - C1 -4IRK 4.4 DPO4_ECOLI
1 PsiBlast_PDB 8.4233% -64 - C1 -4IR1 4.9 DPO4_ECOLI
4 PsiBlast_PDB 7.6833% -62 - C1 -4IRD 4.9 DPO4_ECOLI