@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF12721_RIPK1_HUMAN: (2014-10-18 )
MQPDMSLNVIKMKSSDFLESAELDSGGFGKVSLCFHRTQGLMIMKTVYKGPNCIEHNEALLEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVMEYMEKGNLMHVLKAEMSTPLSVKGRIILEIIEGMCYLHGKGVIHKDLKPENILVDNDFHIKIADLGLASFKMWSKLNNEEHNELREVDGTAKKNGGTLYYMAPEHLNDVNAKPTEKSDVYSFAVVLWAIFANKEPYENAICEQQLIMCIKSGNRPDVDDITEYCPREIISLMKLCWEANPEARPTFPGIEEKFRPFYLSQLEESVEEDVKSLKKEYSNENAVVKRMQSLQLDCVAVPSSRSNSATEQPGSLHSSQGLGMGPVEESWFAPSLEHPQEENEPSLQSKLQDEANYHLYGSRMDRQTKQQPRQNVAYNREEERRRRVSHDPFAQQRPYENFQNTEGKGTAYSSAASHGNAVHQPSGLTSQPQVLYQNNGLYSSHGFGTRPLDPGTAGPRVWYRPIPSHMPSLHNIPVPETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQIGAYNYMEIGGTSSSLLDSTNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKNCARKLGFTQSQIDEIDHDYERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLIYVSQN

Atome Classification :

(11 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

242_C_3(2OFV)
LCK_HUMAN
[Raw transfer]




Q1A_A_4(4NEU)
RIPK1_HUMAN
[Raw transfer]




AM6_A_2(3BYU)
LCK_HUMAN
[Raw transfer]




9NH_A_2(3B2W)
LCK_HUMAN
[Raw transfer]




1HW_A_3(4ITI)
RIPK1_HUMAN
[Raw transfer]




STI_A_2(2PL0)
LCK_HUMAN
[Raw transfer]




1HW_B_4(4ITI)
RIPK1_HUMAN
[Raw transfer]




1HX_B_9(4ITJ)
RIPK1_HUMAN
[Raw transfer]




ANP_A_3(4M69)
RIPK3_MOUSE
[Raw transfer]




1HX_A_3(4ITJ)
RIPK1_HUMAN
[Raw transfer]




979_B_2(2OF4)
LCK_HUMAN
[Raw transfer]




1 PsiBlast_PDB 90.38100%-108 - C1 -4NEU 10.1 RIPK1_HUMAN
3 PsiBlast_PDB 87.9998%-123 * C1 *4ITJ 7.8 RIPK1_HUMAN
2 PsiBlast_PDB 86.7698%-124 - C1 -4ITI 8.4 RIPK1_HUMAN
14 PsiBlast_CBE 85.4398%-113 - C1 -4ITJ 7.9 RIPK1_HUMAN
15 PsiBlast_CBE 81.9198%-121 - C1 -4ITI 7.1 RIPK1_HUMAN
9 PsiBlast_PDB 28.9231%-110 - C1 -3BYU 8.8 LCK_HUMAN
8 PsiBlast_PDB 28.1631% -98 - C1 -2PL0 5.8 LCK_HUMAN
13 PsiBlast_PDB 27.9231% -98 - C1 -2OF4 5.7 LCK_HUMAN
11 PsiBlast_PDB 27.8531%-103 - C1 -3B2W 9.7 LCK_HUMAN
10 PsiBlast_PDB 26.6231%-113 - C1 -2OFV 7.3 LCK_HUMAN
4 PsiBlast_PDB 20.3531% -83 - C1 -4M69 6.1 RIPK3_MOUSE