@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF13193_ENTE_ECOLI: (2014-10-19 )
MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASA

Atome Classification :

(9 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1HZ_B_5(4IZ6)
ENTE_ECOLI
[Raw transfer]




1HZ_A_3(4IZ6)
ENTE_ECOLI
[Raw transfer]




HP8_A_3(3O82)
?
[Raw transfer]




IXN_A_3(3O83)
?
[Raw transfer]




AMP_D_4(1MDB)
DHBE_BACSU
[Raw transfer]




AMP_A_2(1MD9)
DHBE_BACSU
[Raw transfer]




H90_A_3(3U17)
?
[Raw transfer]




DBH_A_3(1MD9)
DHBE_BACSU
[Raw transfer]




HTJ_A_3(3O84)
?
[Raw transfer]




DBH_E_5(1MDB)
DHBE_BACSU
[Raw transfer]




H89_A_3(3U16)
?
[Raw transfer]




PNS_B_6(4IZ6)
ENTE_ECOLI
[Raw transfer]




PNS_A_4(4IZ6)
ENTE_ECOLI
[Raw transfer]




29 PsiBlast_CBE 98.27100%-110 - C1 -4IZ6 7.9 ENTE_ECOLI
2 PsiBlast_PDB 97.45100%-109 - C1 -4IZ6 8.3 ENTE_ECOLI
8 PsiBlast_PDB 73.1748% -98 - C1 -1MDB 5.8 DHBE_BACSU
10 PsiBlast_PDB 70.3247% -95 - C1 -1MD9 5.4 DHBE_BACSU
5 PsiBlast_PDB 64.8455%-106 - C1 -3O84 7.5 ?
6 PsiBlast_PDB 64.5655%-105 - C1 -3U16 8.0 ?
7 PsiBlast_PDB 64.3855%-106 - C1 -3U17 8.6 ?
3 PsiBlast_PDB 64.3055%-103 - C1 -3O82 7.8 ?
4 PsiBlast_PDB 64.2355%-106 - C1 -3O83 9.4 ?