@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_ECR_AEDAE: (2016-03-18 )
MYRLNIVSTNPSGSVQQQQQAQGQQVISSVVRPQQQQPPPQLALVQTGGSGGTTTTIIGLTSLNALNATTITGLVAGAAGSSTSAIAAAGASNSGSGPSTATTKHILKAATTNNNISIVKIVDDIMLKAVKVEPLPMDTGGGGGGVSMIPSSATTSGGVTVTAIPASVAPMPPVAAGTNVSSNGSVTVYASGKRRLESNEEWISSPSPGSVPGSAPPLSPSPGSQSTTYTTTMSNGYSSPMSTGSYDPYSPNGKMGREDLSPSSSLNGYTDGSDAKKQKKGPTPRQQEELCLVCGDRESGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEILPILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVIYKLIWYQDGYEQPSEEDLKRIMIGSPNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFCRQMFSLTVDNVEYALLTAIVIFSDRPGLEQAELVEHIQSYYIDTLRIYILNRHAGDPKCSVIFAKLLSILTELRTLGNQNSEMCFSLKLKNRKLPRFLEEIWDVQDIPPSMQAQMHSHGTQSSSSSSSSSSSSSNGSSNGNSSSNSNSSQHGPHPHPHGQQLTPNQQQHQQQHSQLQQVHANGSGSGGGSNNNSSSGGVVPGLGMLDQV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P1A_C_3(1R1K)

[Raw transfer]




P1A_G_8(4UMM)
?
[Raw transfer]




20E_D_5(2R40)

[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




HWG_C_3(1R20)

[Raw transfer]




P1A_E_3(4OZT)
?
[Raw transfer]




834_D_4(3IXP)
?
[Raw transfer]




4KM_A_5(5AVI)
?
[Raw transfer]




45 Fugue 90.5441%-106 - C3 -4NQA - NR1H2_HUMAN -
1 PsiBlast_PDB 88.6372%-141 - C3 -1R1K 9.4
3 PsiBlast_PDB 88.1572%-141 - C3 -4UMM 9.4 ?
2 PsiBlast_PDB 88.1272%-145 - C3 -2R40 7.8
5 PsiBlast_PDB 85.2471%-140 - C3 -3IXP 7.8 ?
7 PsiBlast_PDB 83.7968%-131 - C3 -2NXX - ? -
8 PsiBlast_PDB 83.6267%-136 - C3 -4OZT 10.8 ?
4 PsiBlast_PDB 83.1571%-136 - C3 -1R20 7.1
23 HHSearch 82.8065%-126 - C3 -1Z5X 10.7 ?
6 PsiBlast_PDB 81.5060%-127 - C3 -1Z5X 10.7 ?
17 PsiBlast_PDB 73.6738%-131 - C3 -3IPU - NR1H3_HUMAN -
14 PsiBlast_PDB 72.2338%-127 - C3 -3FAL - NR1H3_MOUSE -
19 PsiBlast_PDB 71.8838%-136 - C3 -5AVL - ? -
16 PsiBlast_PDB 71.8438%-139 - C3 -3IPS - NR1H3_HUMAN -
13 PsiBlast_PDB 71.3938%-127 - C3 -3FC6 - NR1H3_MOUSE -
18 PsiBlast_PDB 70.5738%-140 - C3 -5AVI 6.1 ?
15 PsiBlast_PDB 70.0638%-139 - C3 -3IPQ - NR1H3_HUMAN -
20 PsiBlast_PDB 69.9038%-126 - C3 -2ACL - NR1H3_MOUSE -
26 HHSearch 67.0542%-138 - C3 -3IPQ - NR1H3_HUMAN -
44 HHSearch 66.4431%-137 * C3 *1FCY - RARG_HUMAN -