@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_ECR_BOMMO: (2016-03-18 )
MRVENVDNVSFALNGRADEWCMSVETRLDSLVREKSEVKAYVGGCPSVITDAGAYDALFDMRRRWSNNGGFPLRMLEESSSEVTSSSALGLPPAMVMSPESLASPEYRALELWSYDDGITYNTAQSLLGACNMQQQQLQPQQPHPAPPTLPTMPLPMPPTTPKSENESMSSGREELSPASSINGCSADADARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHMPPIMQCDPPPPEAARIHEVVPRYLSEKLMEQNRQKNIPPLSANQKSLIARLVWYQEGYEQPSDEDLKRVTQTWQSDEEDEESDLPFRQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAASDSVLFANNKAYTRDNYRQGGMAYVIEDLLHFCRCMFAMGMDNVHFALLTAIVIFSDRPGLEQPSLVEEIQRYYLNTLRIYIINQNSASSRCAVIYGRILSVLTELRTLGTQNSNMCISLKLKNRKLPPFLEEIWDVAEVATTHPTVLPPTNPVVL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P1A_G_8(4UMM)
?
[Raw transfer]




P1A_C_3(1R1K)

[Raw transfer]




20E_D_5(2R40)

[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




P1A_E_3(4OZT)
?
[Raw transfer]




HWG_C_3(1R20)

[Raw transfer]




834_D_4(3IXP)
?
[Raw transfer]




2 PsiBlast_PDB 88.8489%-132 - C3 -2R40 11.3
3 PsiBlast_PDB 88.0989%-124 - C3 -4UMM 10.6 ?
1 PsiBlast_PDB 87.7289%-124 - C3 -1R1K 10.5
45 Fugue 86.5539% -95 - C3 -4NQA - NR1H2_HUMAN -
5 PsiBlast_PDB 85.6089%-130 - C3 -3IXP 8.9 ?
9 PsiBlast_PDB 85.3737%-102 - C3 -4NQA - NR1H2_HUMAN (first) -
4 PsiBlast_PDB 84.6389%-126 - C3 -1R20 7.4
6 PsiBlast_PDB 79.4061%-111 - C3 -4OZT 9.6 ?
7 PsiBlast_PDB 77.9558%-114 - C3 -2NXX - ? -
23 HHSearch 77.6258%-108 - C3 -1Z5X 9.0 ?
8 PsiBlast_PDB 75.0150%-106 - C3 -1Z5X 9.0 ?
14 PsiBlast_PDB 72.3538%-110 - C3 -3FC6 - NR1H3_MOUSE -
15 PsiBlast_PDB 71.0838%-111 - C3 -3FAL - NR1H3_MOUSE -
18 PsiBlast_PDB 71.0637%-110 - C3 -3IPU - NR1H3_HUMAN -
17 PsiBlast_PDB 70.7537%-117 - C3 -3IPS - NR1H3_HUMAN -
19 PsiBlast_PDB 70.3837%-119 - C3 -5AVI - ? -
16 PsiBlast_PDB 68.9037%-113 - C3 -3IPQ - NR1H3_HUMAN -
20 PsiBlast_PDB 68.5037%-116 - C3 -5AVL - ? -
47 Fugue 66.4325% -87 - C3 -1BSX - THB_HUMAN -
10 PsiBlast_PDB 66.3753%-130 - C3 -4OZR - ? -