@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_ECR_DROME: (2016-03-18 )
MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLWLCGNESGSFGGSNGHGLSQQQQSVITLAMHGCSSTLPAQTTIIPINGNANGNGGSTNGQYVPGATNLGALANGMLNGGFNGMQQQIQNGHGLINSTTPSTPTTPLHLQQNLGGAGGGGIGGMGILHHANGTPNGLIGVVGGGGGVGLGVGGGGVGGLGMQHTPRSDSVNSISSGRDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHLQITQEENERLERAERMRASVGGAITAGIDCDSASTSAAAAAAQHQPQPQPQPQPSSLTQNDSQHQTQPQLQPQLPPQLQGQLQPQLQPQLQTQLQPQIQPQPQLLPVSAPVPASVTAPGSLSAVSTSSEYMGGSAAIGPITPATTSSITAAVTASSTTSAVPMGNGVGVGVGVGGNVSMYANAQTAMALMGVALHSHQEQLIGGVAVKSEHSTTA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P1A_G_8(4UMM)
?
[Raw transfer]




20E_D_5(2R40)

[Raw transfer]




P1A_C_3(1R1K)

[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




P1A_E_3(4OZT)
?
[Raw transfer]




HWG_C_3(1R20)

[Raw transfer]




834_D_4(3IXP)
?
[Raw transfer]




46 Fugue 87.8341%-102 - C1 -4NQA - NR1H2_HUMAN -
3 PsiBlast_PDB 84.2368%-134 - C1 -4UMM 9.6 ?
1 PsiBlast_PDB 84.2068%-134 - C1 -1R1K 9.6
2 PsiBlast_PDB 83.3568%-135 - C1 -2R40 7.9
7 PsiBlast_PDB 80.1465%-125 - C1 -4OZT 10.8 ?
4 PsiBlast_PDB 79.7568%-129 - C1 -1R20 7.4
8 PsiBlast_PDB 79.3666%-123 - C1 -2NXX - ? -
5 PsiBlast_PDB 79.1168%-131 - C1 -3IXP 7.7 ?
23 HHSearch 77.9262%-121 - C1 -1Z5X 10.6 ?
6 PsiBlast_PDB 75.7155%-119 - C1 -1Z5X 10.6 ?
18 PsiBlast_PDB 72.5738%-125 - C1 -3IPU - NR1H3_HUMAN -
14 PsiBlast_PDB 72.1338%-123 - C1 -3FAL - NR1H3_MOUSE -
13 PsiBlast_PDB 71.7938%-121 - C1 -3FC6 - NR1H3_MOUSE -
15 PsiBlast_PDB 70.9138%-120 - C1 -2ACL - NR1H3_MOUSE -
20 PsiBlast_PDB 70.6038%-130 - C1 -5AVL - ? -
19 PsiBlast_PDB 70.2538%-135 - C1 -5AVI - ? -
16 PsiBlast_PDB 69.9538%-135 - C1 -3IPQ - NR1H3_HUMAN -
17 PsiBlast_PDB 68.4138%-133 - C1 -3IPS - NR1H3_HUMAN -
26 HHSearch 65.2042%-130 - C1 -3IPQ - NR1H3_HUMAN -
45 Fugue 64.5328%-101 - C1 -1BSX - THB_HUMAN -