@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_ECR_LUCCU: (2016-03-18 )
MMKRRWSNNGGFAALKMLEESSSEVTSSSNGLVLSSDINMSPSSLDSPVYGDQEMWLCNDSASYNNSHQHSVITSLQGCTSSLPAQTTIIPLSALPNSNNASLNNQNQNYQNGNSMNTNLSVNTNNSVGGGGGGGGVPGMTSLNGLGGGGGSQVNNHNHSHNHLHHNSNSNHSNSSSHHTNGHMGIGGGGGGLSVNINGPNIVSNAQQLNSLQASQNGQVIHANIGIHSIISNGLNHHHHHHMNNSSMMHHTPRSESANSISSGRDDLSPSSSLNGFSTSDASDVKKIKKGPAPRLQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKIQTSVCATEIKKEILDLMTCEPPSHPTCPLLPEDILAKCQARNIPPLSYNQLAVIYKLIWYQDGYEQPSEEDLKRIMSSPDENESQHDASFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHNSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMYSMKVDNVEYALLTAIVIFSDRPGLEEAELVEAIQSYYIDTLRIYILNRHCGDPMSLVFFAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHIQATQAEKAAQEAQATTSAISAAATSSSSINTSMATSSSSSLSPSAASTPNGGAVDYVGTDMSMSLVQSDNA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

20E_D_5(2R40)

[Raw transfer]




P1A_G_8(4UMM)
?
[Raw transfer]




P1A_C_3(1R1K)

[Raw transfer]




20E_D_5(2R40)

[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




P1A_E_3(4OZT)
?
[Raw transfer]




HWG_C_3(1R20)

[Raw transfer]




834_D_4(3IXP)
?
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




46 Fugue 88.1940%-106 - C1 -4NQA - NR1H2_HUMAN -
6 PsiBlast_PDB 86.3669%-139 - C1 -4UMM 9.6 ?
4 PsiBlast_PDB 86.2669%-139 - C1 -1R1K 9.7
5 PsiBlast_PDB 85.8969%-139 - C1 -2R40 7.9
7 PsiBlast_PDB 83.9567%-128 - C1 -4OZT 10.8 ?
3 PsiBlast_PDB 82.6369%-136 - C1 -3IXP 7.7 ?
8 PsiBlast_PDB 82.5867%-126 - C1 -2NXX - ? -
23 HHSearch 81.9764%-123 - C1 -1Z5X 10.6 ?
2 PsiBlast_PDB 81.7869%-133 - C1 -1R20 7.4
1 PsiBlast_PDB 80.5258%-121 - C1 -1Z5X 10.6 ?
24 HHSearch 78.9773%-138 - C1 -2R40 7.8
13 PsiBlast_PDB 73.8139%-125 - C1 -3FC6 - NR1H3_MOUSE -
14 PsiBlast_PDB 73.6039%-124 - C1 -3FAL - NR1H3_MOUSE -
19 PsiBlast_PDB 73.0539%-127 - C1 -3IPU - NR1H3_HUMAN -
15 PsiBlast_PDB 72.5639%-123 - C1 -2ACL - NR1H3_MOUSE -
20 PsiBlast_PDB 70.6339%-139 - C1 -5AVI - ? -
18 PsiBlast_PDB 70.3339%-135 - C1 -3IPS - NR1H3_HUMAN -
17 PsiBlast_PDB 70.1439%-137 - C1 -3IPQ - NR1H3_HUMAN -
47 Fugue 68.0027%-108 - C1 -1BSX - THB_HUMAN -
16 PsiBlast_PDB 67.0738%-125 - C1 -1UHL 3.9 NR1H3_HUMAN