@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_GCR_MOUSE: (2016-03-19 )
MDSKESLAPPGRDEVPSSLLGRGRGSVMDLYKTLRGGATVKVSASSPSVAAASQADSKQQRILLDFSKGSASNAQQQQQQQQPQPDLSKAVSLSMGLYMGETETKVMGNDLGYPQQGQLGLSSGETDFRLLEESIANLNRSTSRPENPKSSTPAAGCATPTEKEFPQTHSDPSSEQQNRKSQPGTNGGSVKLYTTDQSTFDILQDLEFSAGSPGKETNESPWRSDLLIDENLLSPLAGEDDPFLLEGDVNEDCKPLILPDTKPKIQDTGDTILSSPSSVALPQVKTEKDDFIELCTPGVIKQEKLGPVYCQASFSGTNIIGNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPVFNVIPPIPVGSENWNRCQGSGEDNLTSLGAMNFAGRSVFSNGYSSPGMRPDVSSPPSSSSTATGPPPKLCLVCSDEASVCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQATAGVSQDTSENANKTIVPAALPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DEX_H_8(1M2Z)
GCR_HUMAN
[Raw transfer]




DEX_A_4(3MNE)

[Raw transfer]




DEX_A_4(3MNP)

[Raw transfer]




DEX_A_4(3MNP)

[Raw transfer]




DEX_I_9(1M2Z)

[Raw transfer]




DEX_A_4(3MNO)

[Raw transfer]




DEX_A_5(3GN8)
?
[Raw transfer]




DEX_B_6(3GN8)
?
[Raw transfer]




DEX_L_12(1P93)

[Raw transfer]




DAY_A_3(3BQD)

[Raw transfer]




MOF_A_6(4E2J)
?
[Raw transfer]




DEX_J_10(1P93)
GCR_HUMAN
[Raw transfer]




486_B_8(3H52)
GCR_HUMAN
[Raw transfer]




DEX_I_9(1P93)
GCR_HUMAN
[Raw transfer]




LSJ_A_3(4LSJ)

[Raw transfer]




GW6_B_6(3CLD)

[Raw transfer]




MOF_A_3(4P6W)

[Raw transfer]




GW6_A_5(3CLD)
GCR_HUMAN
[Raw transfer]




MOF_B_7(4E2J)
?
[Raw transfer]




JZN_B_8(3K23)
GCR_HUMAN
[Raw transfer]




DEX_K_11(1P93)
GCR_HUMAN
[Raw transfer]




JZN_A_7(3K23)
GCR_HUMAN
[Raw transfer]




1CA_B_7(3RY9)
?
[Raw transfer]




1CA_A_4(3RY9)
?
[Raw transfer]




29M_A_5(4MDD)
GCR_HUMAN
[Raw transfer]




486_A_7(3H52)
GCR_HUMAN
[Raw transfer]




NN7_A_4(4CSJ)

[Raw transfer]




486_B_2(1NHZ)

[Raw transfer]




JZS_A_5(3K22)
GCR_HUMAN
[Raw transfer]




486_D_11(3H52)

[Raw transfer]




866_A_5(3E7C)
GCR_HUMAN
[Raw transfer]




JZN_C_9(3K23)

[Raw transfer]




866_B_7(3E7C)

[Raw transfer]




NDR_C_3(1SQN)
PRGR_HUMAN
[Raw transfer]




486_C_10(3H52)
GCR_HUMAN
[Raw transfer]




JZR_A_6(3K22)
GCR_HUMAN
[Raw transfer]




EDO_A_3(4CSJ)

[Raw transfer]




6 PsiBlast_PDB 96.5598%-140 - C1 -3MNP 8.5
72 HHSearch 95.6899%-140 - C1 -3MNP 8.5
31 PsiBlast_CBE 94.8992%-141 - C1 -4P6X - GCR_HUMAN -
11 PsiBlast_PDB 94.2394%-141 - C1 -3K22 9.0 GCR_HUMAN
7 PsiBlast_PDB 94.2394%-141 - C1 -1M2Z 8.3 GCR_HUMAN
24 PsiBlast_CBE 94.0394%-139 - C1 -1M2Z 8.5
4 PsiBlast_PDB 93.9299%-140 - C1 -3MNE 8.4
25 PsiBlast_CBE 93.7394%-146 - C1 -3E7C 8.5
15 PsiBlast_PDB 93.5292%-140 - C1 -4P6W 9.6
32 PsiBlast_CBE 93.1792%-137 - C1 -4P6X - GCR_HUMAN -
5 PsiBlast_PDB 93.1498%-142 - C1 -3MNO 8.4
8 PsiBlast_PDB 92.6394%-144 - C1 -3E7C 9.5 GCR_HUMAN
30 PsiBlast_CBE 92.5592%-143 - C1 -4P6X - GCR_HUMAN -
21 PsiBlast_CBE 92.4492%-146 - C1 -1P93 7.5
27 PsiBlast_CBE 92.4194%-140 - C1 -3K23 11.6 GCR_HUMAN
13 PsiBlast_PDB 92.1594%-141 - C1 -3BQD 10.3
3 PsiBlast_PDB 92.1292%-136 - C1 -4CSJ 10.1
33 PsiBlast_CBE 92.1192%-140 - C1 -4P6X - GCR_HUMAN -
29 PsiBlast_CBE 91.9392%-140 - C1 -4P6X - -
22 PsiBlast_CBE 91.6692%-147 - C1 -1P93 7.5 GCR_HUMAN
9 PsiBlast_PDB 90.8894%-142 - C1 -3CLD 9.7 GCR_HUMAN
28 PsiBlast_CBE 90.7894%-141 - C1 -3CLD 9.7
23 PsiBlast_CBE 89.7292%-141 - C1 -1P93 7.8 GCR_HUMAN
2 PsiBlast_PDB 89.6992%-141 - C1 -1P93 7.6 GCR_HUMAN
26 PsiBlast_CBE 89.1694%-137 - C1 -3K23 6.5
10 PsiBlast_PDB 88.9594%-130 - C1 -3K23 6.9 GCR_HUMAN
12 PsiBlast_PDB 87.6394%-147 - C1 -4LSJ 9.3
18 PsiBlast_PDB 87.4078%-134 - C1 -3GN8 8.7 ?
38 PsiBlast_CBE 86.7078%-131 - C1 -4E2J 8.9 ?
19 PsiBlast_PDB 86.6878%-134 - C1 -4E2J 9.3 ?
37 PsiBlast_CBE 86.5678%-134 - C1 -3GN8 8.6 ?
36 PsiBlast_CBE 85.9293%-132 - C1 -3H52 8.3 GCR_HUMAN
20 PsiBlast_PDB 85.3572%-132 - C1 -3RY9 8.8 ?
39 PsiBlast_CBE 84.3472%-134 - C1 -3RY9 8.5 ?
34 PsiBlast_CBE 84.3193%-143 - C1 -3H52 6.0
17 PsiBlast_PDB 84.1393%-131 - C1 -3H52 9.1 GCR_HUMAN
16 PsiBlast_PDB 82.4291%-129 - C1 -4MDD 10.1 GCR_HUMAN
1 PsiBlast_PDB 81.0592%-133 - C1 -1NHZ 9.9
35 PsiBlast_CBE 80.6293%-137 - C1 -3H52 5.2 GCR_HUMAN
73 HHSearch 78.0355%-125 - C1 -1SQN 6.2 PRGR_HUMAN