@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_HNF4A_HUMAN: (2016-03-19 )
MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MYR_C_3(1PZL)
HNF4A_HUMAN
[Raw transfer]




MYR_C_3(1PZL)
HNF4A_HUMAN
[Raw transfer]




MYR_A_3(3FS1)
HNF4A_HUMAN
[Raw transfer]




DAO_E_5(1M7W)
HNF4A_RAT
[Raw transfer]




DAO_H_8(1M7W)
HNF4A_RAT
[Raw transfer]




DAO_G_7(1M7W)
HNF4A_RAT
[Raw transfer]




DAO_F_6(1M7W)
HNF4A_RAT
[Raw transfer]




PLM_B_2(1LV2)
HNF4G_HUMAN
[Raw transfer]




21 PsiBlast_CBE 93.5897%-127 - C5 -4IQR - HNF4A_HUMAN -
23 PsiBlast_CBE 92.0997%-130 - C5 -4IQR - HNF4A_HUMAN -
22 PsiBlast_CBE 92.0797%-125 - C5 -4IQR - HNF4A_HUMAN -
3 PsiBlast_PDB 83.8099%-132 - C5 -1PZL 6.4 HNF4A_HUMAN
4 PsiBlast_PDB 82.04100%-130 - C5 -3FS1 6.6 HNF4A_HUMAN
34 HHSearch 81.09100%-145 - C5 -1PZL 6.4 HNF4A_HUMAN
1 PsiBlast_PDB 80.4097%-138 - C5 -1M7W 5.3 HNF4A_RAT
24 PsiBlast_CBE 79.1697%-137 - C5 -1M7W 4.7 HNF4A_RAT
2 PsiBlast_PDB 75.71100%-145 - C5 -4B7W - HNF4A_HUMAN -
5 PsiBlast_PDB 74.7281%-120 - C5 -1LV2 5.6 HNF4G_HUMAN
26 PsiBlast_CBE 73.7997%-132 - C5 -1M7W 5.4 HNF4A_RAT
8 PsiBlast_PDB 73.7042%-109 - C5 -4NQA - RXRA_HUMAN -
25 PsiBlast_CBE 72.5397%-124 - C5 -1M7W 4.8 HNF4A_RAT
7 PsiBlast_PDB 71.4842%-113 - C5 -3E00 - RXRA_HUMAN -
6 PsiBlast_PDB 70.7142%-112 - C5 -3DZU - RXRA_HUMAN -
55 Fugue 67.9430% -80 - C5 -4NQA - NR1H2_HUMAN -
19 PsiBlast_PDB 64.0142%-121 - C5 -1MV9 - RXRA_HUMAN -
14 PsiBlast_PDB 63.9642%-120 - C5 -3E94 - RXRA_HUMAN -
20 PsiBlast_PDB 63.5942%-118 - C5 -1MVC - RXRA_HUMAN -
12 PsiBlast_PDB 62.9642%-121 - C5 -4OC7 - RXRA_HUMAN -