@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_MCR_RAT: (2016-03-19 )
METKGYHSLPEGLDMERRWSQVSQTLERSSLGPAERTTENNYMEIVNVSCVSGAIPNNSTQGSSKEKHELLPYIQQDNSRSGILPSDIKTELESKELSATVAESMGLYMDSVRDAEYTYDQQNQQGSLSPTKIYQNMEQLVKFYKENGHRSSTLSAMSRPLRSFMPDSAASMNGGALRAIVKSPIICHEKSSSVSSPLNMASSVCSPVGINSMSSSTTSFGSFPVHSPITQGTSLTCSPSVENRGSRSHSPTHASNVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSSVSSPANLNNSRCSVSSPSNNTNNRSTLSSPTASTVGSIGSPISNAFSYATSGASAGAGAIQDVVPSPDTHEKGAHDVPFPKTEEVEKAISNGVTGPLNIVQYIKSEPDGAFSSSCLGGNSKISPSSPFSVPIKQESSKHSCSGASFKGNPTVNPFPFMDGSYFSFMDDKDYYSLSGILGPPVPGFDGSCEDSAFPVGIKQEPDDGSYYPEASIPSSAIVGVNSGGQSFHYRIGAQGTISLSRSPRDQSFQHLSSFPPVNTLVESWKPHGDLSSRRSDGYPVLEYIPENVSSSTLRSVSTGSSRPSKICLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMNLGARKSKKLGKLKGLHEEQPQQPPPPPPQSPEEGTTYIAPTKEPSVNSALVPQLTSITHALTPSPAMILENIEPETVYAGYDNSKPDTAESLLSTLNRLAAKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQLLYFAPDLVFNEEKMHQSAMYELCQGMRQISLQFVRLQLTFEEYSIMKVLLLLSTVPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNSSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESQALKVEFPAMLVEIITDQLPKVESGNAKPLYFHRK

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C0R_C_3(2A3I)

[Raw transfer]




1CA_E_5(2ABI)
MCR_HUMAN
[Raw transfer]




1CA_D_4(1Y9R)

[Raw transfer]




1CA_C_3(2AA7)

[Raw transfer]




AS4_D_4(2AA2)

[Raw transfer]




1CA_D_4(2ABI)
MCR_HUMAN
[Raw transfer]




1CA_C_3(1Y9R)
MCR_HUMAN
[Raw transfer]




DEX_A_4(3MNP)

[Raw transfer]




DEX_A_5(3GN8)
?
[Raw transfer]




1CA_F_6(2ABI)

[Raw transfer]




1CA_A_4(3RY9)
?
[Raw transfer]




SNL_A_4(2AB2)
MCR_HUMAN
[Raw transfer]




HFN_A_2(4PF3)

[Raw transfer]




STR_A_3(2AA5)
MCR_HUMAN
[Raw transfer]




STR_F_6(1YA3)

[Raw transfer]




LD1_A_2(3VHV)

[Raw transfer]




STR_D_4(1YA3)
MCR_HUMAN
[Raw transfer]




WFG_A_2(3WFG)

[Raw transfer]




STR_A_3(4FN9)
?
[Raw transfer]




WFF_A_2(3WFF)

[Raw transfer]




STR_B_9(4FN9)
?
[Raw transfer]




SNL_A_2(3VHU)

[Raw transfer]




STR_B_4(2AA6)

[Raw transfer]




STR_B_4(2AA5)

[Raw transfer]




STR_A_3(2AA6)
MCR_HUMAN
[Raw transfer]




SNL_B_5(2AB2)

[Raw transfer]




NDR_C_3(1SQN)
PRGR_HUMAN
[Raw transfer]




STR_E_5(1YA3)
MCR_HUMAN
[Raw transfer]




LD2_A_3(3VHV)

[Raw transfer]




12 PsiBlast_PDB 93.6492%-116 - C3 -3VHV 8.7
24 PsiBlast_CBE 93.5592%-115 - C3 -2AA6 8.2
3 PsiBlast_PDB 93.4092%-117 - C3 -2AA7 8.6
5 PsiBlast_PDB 93.3092%-113 - C3 -2AA6 8.2 MCR_HUMAN
6 PsiBlast_PDB 93.2192%-113 - C3 -2AAX - MCR_HUMAN -
22 PsiBlast_CBE 92.7992%-116 - C3 -2AB2 7.6
1 PsiBlast_PDB 92.7492%-118 - C3 -2AA2 8.7
7 PsiBlast_PDB 92.7392%-111 - C3 -2AB2 7.2 MCR_HUMAN
9 PsiBlast_PDB 92.5291%-108 - C3 -3WFG 7.8
10 PsiBlast_PDB 92.5091%-107 - C3 -4PF3 9.2
2 PsiBlast_PDB 92.4892%-113 - C3 -2AA5 8.0 MCR_HUMAN
8 PsiBlast_PDB 92.3191%-109 - C3 -3WFF 7.2
21 PsiBlast_CBE 92.0792%-114 - C3 -2AA5 8.0
13 PsiBlast_PDB 91.8794%-113 - C3 -2A3I 8.9
4 PsiBlast_PDB 91.4692%-117 - C3 -3VHU 9.5
34 PsiBlast_CBE 89.9293%-126 - C3 -2OAX - MCR_HUMAN -
26 PsiBlast_CBE 89.6693%-120 - C3 -2ABI 8.6 MCR_HUMAN
16 PsiBlast_PDB 89.5093%-120 - C3 -2OAX - MCR_HUMAN -
32 PsiBlast_CBE 89.3493%-124 - C3 -2OAX - MCR_HUMAN -
15 PsiBlast_PDB 89.3493%-123 - C3 -1YA3 7.8 MCR_HUMAN
14 PsiBlast_PDB 89.1193%-119 - C3 -1Y9R 7.8 MCR_HUMAN
29 PsiBlast_CBE 88.9693%-115 - C3 -1Y9R 8.6
27 PsiBlast_CBE 88.8193%-121 - C3 -1YA3 6.8
11 PsiBlast_PDB 88.6693%-128 - C3 -2ABI 8.7 MCR_HUMAN
28 PsiBlast_CBE 88.5893%-124 - C3 -1YA3 7.7 MCR_HUMAN
25 PsiBlast_CBE 88.4593%-119 - C3 -2ABI 8.1
19 PsiBlast_PDB 85.2269%-108 - C3 -3RY9 8.6 ?
18 PsiBlast_PDB 84.8971%-105 - C3 -4FN9 7.8 ?
35 PsiBlast_CBE 84.8771%-107 - C3 -4FN9 7.4 ?
20 PsiBlast_PDB 82.9361%-110 - C3 -3GN8 7.3 ?
86 HHSearch 82.7757%-111 - C3 -3MNP 5.6
85 HHSearch 79.9957%-112 * C3 *1SQN 6.4 PRGR_HUMAN