@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_NR1H2_HUMAN: (2016-03-19 )
MSSPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDPDVPGTDEASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




0KS_A_5(4DK7)
NR1H2_HUMAN
[Raw transfer]




O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




4KQ_A_3(5AVL)
?
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
?
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




4KM_C_6(5AVI)
?
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




BU1_A_3(4RAK)
NR1H2_HUMAN
[Raw transfer]




IPA_A_8(1PQ6)
NR1H2_HUMAN
[Raw transfer]




67 Fugue 90.64100%-105 - C4 -4NQA - NR1H2_HUMAN -
21 PsiBlast_CBE 89.4497%-105 - C4 -4NQA - NR1H2_HUMAN -
1 PsiBlast_PDB 88.7397%-111 - C4 -4NQA - NR1H2_HUMAN (first) -
11 PsiBlast_PDB 79.1297%-119 - C4 -3L0E 10.3 NR1H2_HUMAN
31 PsiBlast_CBE 78.70100%-116 - C4 -1PQ6 12.6 NR1H2_HUMAN
30 PsiBlast_CBE 78.69100%-130 - C4 -1PQ6 11.9 NR1H2_HUMAN
4 PsiBlast_PDB 78.64100%-123 - C4 -1PQ6 2.1 NR1H2_HUMAN
34 PsiBlast_CBE 77.9798%-120 - C4 -4DK8 8.4 NR1H2_HUMAN
25 PsiBlast_CBE 77.90100%-118 - C4 -1PQC 8.0 NR1H2_HUMAN
23 PsiBlast_CBE 77.83100%-117 - C4 -3KFC 10.4 NR1H2_HUMAN
28 PsiBlast_CBE 77.67100%-115 - C4 -1PQ9 5.8 NR1H2_HUMAN
24 PsiBlast_CBE 77.65100%-129 - C4 -1PQC 3.4 NR1H2_HUMAN
6 PsiBlast_PDB 77.61100%-118 - C4 -1PQC - NR1H2_HUMAN -
29 PsiBlast_CBE 77.60100%-112 - C4 -1PQ9 5.9 NR1H2_HUMAN
7 PsiBlast_PDB 77.58100%-119 - C4 -3KFC - NR1H2_HUMAN -
22 PsiBlast_CBE 77.57100%-115 - C4 -3KFC 9.4 NR1H2_HUMAN
32 PsiBlast_CBE 77.5097%-118 - C4 -4RAK 12.0 NR1H2_HUMAN
26 PsiBlast_CBE 77.45100%-112 - C4 -1PQC 8.4 NR1H2_HUMAN
33 PsiBlast_CBE 77.4499%-112 - C4 -1P8D 9.2 NR1H2_HUMAN
27 PsiBlast_CBE 77.31100%-130 - C4 -1PQ9 6.1 NR1H2_HUMAN
12 PsiBlast_PDB 77.2696%-120 - C4 -4DK7 6.6 NR1H2_HUMAN
10 PsiBlast_PDB 77.1898%-117 - C4 -4DK8 8.8 NR1H2_HUMAN
9 PsiBlast_PDB 77.0599%-113 - C4 -1P8D 9.1 NR1H2_HUMAN
14 PsiBlast_PDB 74.4777%-116 - C4 -3FC6 13.3 NR1H3_MOUSE
38 PsiBlast_CBE 73.3677%-110 - C4 -3FC6 13.1 NR1H3_MOUSE
15 PsiBlast_PDB 72.7277%-115 - C4 -3FAL 9.6 NR1H3_MOUSE
39 PsiBlast_CBE 72.4877%-114 - C4 -3FAL 10.0 NR1H3_MOUSE
47 HHSearch 72.1877%-119 - C4 -3IPQ 12.6 NR1H3_HUMAN
16 PsiBlast_PDB 72.0676%-119 - C4 -3IPQ 12.6 NR1H3_HUMAN
8 PsiBlast_PDB 71.8997%-110 - C4 -4RAK 2.4 NR1H2_HUMAN
17 PsiBlast_PDB 71.8576%-121 - C4 -3IPS 9.7 NR1H3_HUMAN
41 PsiBlast_CBE 71.8176%-110 - C4 -3IPU 8.9 NR1H3_HUMAN
42 PsiBlast_CBE 71.7876%-119 - C4 -3IPS 8.5 NR1H3_HUMAN
40 PsiBlast_CBE 71.7376%-119 - C4 -5AVI 9.7 ?
20 PsiBlast_PDB 71.6576%-121 - C4 -5AVL 11.1 ?
18 PsiBlast_PDB 71.2376%-111 - C4 -3IPU 9.0 NR1H3_HUMAN
19 PsiBlast_PDB 70.9676%-119 - C4 -5AVI 9.5 ?
43 PsiBlast_CBE 66.8978%-117 - C4 -1UHL 5.8 NR1H3_HUMAN