@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_NR1H4_MOUSE: (2016-03-19 )
MVMQFQGLENPIQISLHHSHRLSGFVPEGMSVKPAKGMLTEHAAGPLGQNLDLESYSPYNNVPFPQVQPQISSSSYYSNLGFYPQQPEDWYSPGIYELRRMPAETGYQGETEVSEMPVTKKPRMAAASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTANEDDSEGRDLRQVTSTTKFCREKTELTADQQTLLDYIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPAGHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKMYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OOK_C_6(3OOK)

[Raw transfer]




OOF_C_6(3OOF)

[Raw transfer]




OOF_A_5(3OOF)
NR1H4_HUMAN
[Raw transfer]




OMM_C_6(3OMM)

[Raw transfer]




OLF_C_6(3OLF)

[Raw transfer]




OOK_A_5(3OOK)
NR1H4_HUMAN
[Raw transfer]




OMM_A_5(3OMM)
NR1H4_HUMAN
[Raw transfer]




OLF_A_5(3OLF)
NR1H4_HUMAN
[Raw transfer]




OMK_A_5(3OMK)
NR1H4_HUMAN
[Raw transfer]




OMK_C_6(3OMK)

[Raw transfer]




OKI_A_5(3OKI)
NR1H4_HUMAN
[Raw transfer]




OKI_C_6(3OKI)

[Raw transfer]




59G_A_5(3RUT)

[Raw transfer]




33Y_A_2(3FLI)

[Raw transfer]




O62_A_3(3DCU)

[Raw transfer]




OKH_A_4(3OKH)

[Raw transfer]




CHC_G_7(1OT7)
NR1H4_RAT
[Raw transfer]




088_A_3(3HC6)

[Raw transfer]




37G_A_5(3RUU)

[Raw transfer]




IU5_F_6(1OT7)

[Raw transfer]




82X_A_3(3HC5)

[Raw transfer]




JN3_A_3(4QE6)
?
[Raw transfer]




31D_A_5(4QE8)
?
[Raw transfer]




635_A_2(3L1B)

[Raw transfer]




CHC_G_7(1OSV)
NR1H4_RAT
[Raw transfer]




CHC_F_6(1OSV)

[Raw transfer]




064_A_3(3DCT)

[Raw transfer]




P88_A_3(3P88)

[Raw transfer]




MUF_B_8(3BEJ)

[Raw transfer]




MUF_A_7(3BEJ)
NR1H4_HUMAN
[Raw transfer]




708_A_3(3GD2)

[Raw transfer]




643_A_3(3FXV)

[Raw transfer]




XX9_B_4(4OIV)

[Raw transfer]




FEX_B_2(1OSH)

[Raw transfer]




034_A_4(3RVF)

[Raw transfer]




89P_A_3(3P89)

[Raw transfer]




XX9_A_3(4OIV)
NR1H4_HUMAN
[Raw transfer]




IVM_A_9(4WVD)
NR1H4_HUMAN
[Raw transfer]




31D_B_10(4QE8)
?
[Raw transfer]




IVM_B_14(4WVD)

[Raw transfer]




27 PsiBlast_CBE 95.7294%-128 - C2 -3OOF 11.7
26 PsiBlast_CBE 95.5194%-127 - C2 -3OOK 12.1 NR1H4_HUMAN
18 PsiBlast_PDB 94.9794%-124 - C2 -3OLF 11.7 NR1H4_HUMAN
30 PsiBlast_CBE 94.8894%-129 - C2 -3OMK 11.7
17 PsiBlast_PDB 94.8594%-125 - C2 -3OKI 10.8 NR1H4_HUMAN
20 PsiBlast_PDB 94.8394%-127 - C2 -3OMM 11.6 NR1H4_HUMAN
19 PsiBlast_PDB 94.4794%-127 - C2 -3OMK 11.7 NR1H4_HUMAN
28 PsiBlast_CBE 94.3994%-123 - C2 -3OOF 11.7 NR1H4_HUMAN
31 PsiBlast_CBE 94.3894%-127 - C2 -3OLF 11.9
25 PsiBlast_CBE 94.3594%-128 - C2 -3OOK 12.1
29 PsiBlast_CBE 94.2194%-126 - C2 -3OMM 12.0
32 PsiBlast_CBE 93.3494%-126 - C2 -3OKI 10.5
6 PsiBlast_PDB 92.3995%-126 - C2 -3HC5 11.7
13 PsiBlast_PDB 92.1695%-123 - C2 -3RUU 12.0
16 PsiBlast_PDB 92.0794%-128 - C2 -3OKH 10.5
22 PsiBlast_CBE 91.7398%-124 - C2 -1OSV 9.9
21 PsiBlast_CBE 91.6794%-125 - C2 -3BEJ 9.9
10 PsiBlast_PDB 91.5795%-124 - C2 -4QE6 9.4 ?
4 PsiBlast_PDB 91.4695%-123 - C2 -3DCT 11.3
5 PsiBlast_PDB 91.2895%-121 - C2 -3DCU 11.4
2 PsiBlast_PDB 91.1498%-125 - C2 -1OSV 9.3 NR1H4_RAT
12 PsiBlast_PDB 90.8695%-117 - C2 -3RUT 11.5
1 PsiBlast_PDB 90.8494%-126 - C2 -3BEJ 10.0 NR1H4_HUMAN
35 PsiBlast_CBE 90.6194%-121 - C2 -3GD2 11.9
3 PsiBlast_PDB 90.5898%-116 - C2 -1OT7 8.8 NR1H4_RAT
23 PsiBlast_CBE 90.5598%-121 - C2 -1OT7 8.3
8 PsiBlast_PDB 90.5194%-133 - C2 -3FLI 9.6
36 PsiBlast_CBE 90.1993%-121 - C2 -3P88 11.5
9 PsiBlast_PDB 89.8695%-136 - C2 -1OSH 11.0
7 PsiBlast_PDB 89.7695%-123 - C2 -3RVF 10.8
14 PsiBlast_PDB 89.2895%-131 - C2 -3L1B 10.6
33 PsiBlast_CBE 89.0794%-116 - C2 -3HC6 11.8
24 PsiBlast_CBE 88.7095%-123 - C2 -4QE8 4.9 ?
15 PsiBlast_PDB 88.3094%-132 - C2 -3FXV 11.5
11 PsiBlast_PDB 87.6695%-124 - C2 -4QE8 5.6 ?
34 PsiBlast_CBE 86.3094%-124 - C2 -3P89 12.1
37 PsiBlast_CBE 84.0094%-120 - C2 -4OIV 9.2
38 PsiBlast_CBE 83.7094%-129 - C2 -4OIV 8.8 NR1H4_HUMAN
40 PsiBlast_CBE 78.6994%-112 - C2 -4WVD 8.3 NR1H4_HUMAN
39 PsiBlast_CBE 77.8494%-109 - C2 -4WVD 4.9