@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_PPARA_MOUSE: (2016-03-19 )
MVDTESPICPLSPLEADDLESPLSEEFLQEMGNIQEISQSIGEESSGSFGFADYQYLGSCPGSEGSVITDTLSPASSPSSVSCPVIPASTDESPGSALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDLKDSETADLKSLGKRIHEAYLKNFNMNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVEDKEAEVRFFHCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIEKLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHPLLQEIYRDMY

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IL2_A_3(3SP6)
PPARA_HUMAN
[Raw transfer]




Y1N_A_2(4CI4)
PPARA_HUMAN
[Raw transfer]




S44_A_2(2ZNN)
PPARA_HUMAN
[Raw transfer]




MMB_A_5(2NPA)
PPARA_HUMAN
[Raw transfer]




MMB_C_6(2NPA)
PPARA_HUMAN
[Raw transfer]




13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]




735_C_3(2P54)
PPARA_HUMAN
[Raw transfer]




13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]




RO7_A_3(3G8I)
PPARA_HUMAN
[Raw transfer]




ET1_B_6(3ET1)
PPARA_HUMAN
[Raw transfer]




CTM_A_3(3FEI)
PPARA_HUMAN
[Raw transfer]




ET1_A_5(3ET1)
PPARA_HUMAN
[Raw transfer]




WY1_B_6(4BCR)
PPARA_HUMAN
[Raw transfer]




471_K_11(1KKQ)
PPARA_HUMAN
[Raw transfer]




WLM_A_3(2XYJ)
PPARD_HUMAN
[Raw transfer]




471_L_12(1KKQ)
PPARA_HUMAN
[Raw transfer]




471_I_9(1KKQ)
PPARA_HUMAN
[Raw transfer]




ET1_A_3(3ET2)
PPARD_HUMAN
[Raw transfer]




471_J_10(1KKQ)
PPARA_HUMAN
[Raw transfer]




08S_A_3(2XYW)
PPARD_HUMAN
[Raw transfer]




Z00_A_3(2XYX)
PPARD_HUMAN
[Raw transfer]




WY1_B_8(4BCR)
PPARA_HUMAN
[Raw transfer]




WY1_A_5(4BCR)
PPARA_HUMAN
[Raw transfer]




GW9_D_12(3E00)
PPARG_HUMAN
[Raw transfer]




PLB_D_12(3DZU)
PPARG_HUMAN
[Raw transfer]




26 PsiBlast_CBE 90.6391%-150 - C- -3KDT - PPARA_HUMAN -
25 PsiBlast_CBE 90.4191%-148 - C- -3KDU - PPARA_HUMAN -
31 PsiBlast_CBE 90.1891%-140 - C3 -2NPA 7.7 PPARA_HUMAN
27 PsiBlast_CBE 90.0292%-135 - C3 -3ET1 5.7 PPARA_HUMAN
15 PsiBlast_PDB 89.5392%-139 - C3 -2P54 7.8 PPARA_HUMAN
6 PsiBlast_PDB 88.9091%-137 - C3 -3SP6 6.4 PPARA_HUMAN
3 PsiBlast_PDB 88.7891%-150 - C3 -4CI4 7.9 PPARA_HUMAN
1 PsiBlast_PDB 88.6891%-139 - C3 -1K7L - PPARA_HUMAN -
5 PsiBlast_PDB 88.6291%-151 - C- -3KDU - PPARA_HUMAN -
4 PsiBlast_PDB 88.4391%-154 - C- -3KDT - PPARA_HUMAN -
10 PsiBlast_PDB 88.2062%-123 - C3 -3E00 4.2 PPARG_HUMAN
14 PsiBlast_PDB 87.7691%-132 - C3 -2NPA 8.0 PPARA_HUMAN
8 PsiBlast_PDB 87.7592%-137 - C3 -3ET1 6.8 PPARA_HUMAN
24 PsiBlast_CBE 87.6291%-141 - C3 -4BCR 5.8 PPARA_HUMAN
2 PsiBlast_PDB 87.4891%-138 - C3 -4BCR 5.0 PPARA_HUMAN
34 HHSearch 86.9092%-138 - C3 -3VI8 10.7 PPARA_HUMAN
12 PsiBlast_PDB 86.9092%-138 - C3 -3VI8 10.7 PPARA_HUMAN
11 PsiBlast_PDB 86.2492%-138 - C3 -2ZNN 10.7 PPARA_HUMAN
16 PsiBlast_PDB 86.2192%-144 - C3 -3FEI 7.4 PPARA_HUMAN
7 PsiBlast_PDB 86.2192%-145 - C3 -3G8I 9.2 PPARA_HUMAN
9 PsiBlast_PDB 86.1962%-127 - C3 -3DZU 4.5 PPARG_HUMAN
28 PsiBlast_CBE 83.9792%-130 - C3 -1KKQ 11.1 PPARA_HUMAN
29 PsiBlast_CBE 83.9592%-134 - C3 -1KKQ 10.3 PPARA_HUMAN
30 PsiBlast_CBE 83.8692%-137 - C3 -1KKQ 7.6 PPARA_HUMAN
13 PsiBlast_PDB 83.2792%-134 - C3 -1KKQ 7.3 PPARA_HUMAN
18 PsiBlast_PDB 81.3266%-141 - C3 -2XYW 9.0 PPARD_HUMAN
19 PsiBlast_PDB 80.9566%-141 - C3 -2XYX 7.2 PPARD_HUMAN
20 PsiBlast_PDB 80.8866%-139 - C3 -3ET2 6.3 PPARD_HUMAN
17 PsiBlast_PDB 79.3166%-128 - C3 -2XYJ 5.8 PPARD_HUMAN