@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_PPARD_MOUSE: (2016-03-19 )
MEQPQEETPEAREEEKEEVAMGDGAPELNGGPEHTLPSSSCADLSQNSSPSSLLDQLQMGCDGASGGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCDRICKIQKKNRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTASEGCQHNPQLADLKAFSKHIYNAYLKNFNMTKKKARSILTGKSSHNAPFVIHDIETLWQAEKGLVWKQLVNGLPPYNEISVHVFYRCQSTTVETVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTHEFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPQVEAIQDTILRALEFHLQVNHPDSQYLFPKLLQKMADLRQLVTEHAQMMQWLKKTESETLLHPLLQEIYKDMY

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IL2_B_4(3SP9)
PPARD_HUMAN
[Raw transfer]



IL2_A_3(3SP9)
PPARD_HUMAN
[Raw transfer]



3EQ_A_3(3PEQ)
PPARD_HUMAN
[Raw transfer]



3EQ_B_10(3PEQ)
PPARD_HUMAN
[Raw transfer]



VCA_A_7(2B50)
PPARD_HUMAN
[Raw transfer]



L41_B_4(3D5F)
PPARD_HUMAN
[Raw transfer]



VCA_B_8(2B50)
PPARD_HUMAN
[Raw transfer]



L41_A_3(3D5F)
PPARD_HUMAN
[Raw transfer]



VCA_E_5(2AWH)
PPARD_HUMAN
[Raw transfer]



VCA_F_6(2BAW)
PPARD_HUMAN
[Raw transfer]



VCA_F_6(2AWH)
PPARD_HUMAN
[Raw transfer]



331_O_15(1Y0S)
PPARD_HUMAN
[Raw transfer]



331_N_14(1Y0S)
PPARD_HUMAN
[Raw transfer]



13M_A_2(3VI8)
PPARA_HUMAN
[Raw transfer]



401_B_6(2ZNQ)
PPARD_HUMAN
[Raw transfer]



K55_A_4(2ZNP)
PPARD_HUMAN
[Raw transfer]



GW0_A_2(3TKM)
PPARD_HUMAN
[Raw transfer]



K55_B_6(2ZNP)
PPARD_HUMAN
[Raw transfer]



WLM_A_3(2XYJ)
PPARD_HUMAN
[Raw transfer]



WLM_B_6(2XYJ)
PPARD_HUMAN
[Raw transfer]



ET1_B_7(3ET2)
PPARD_HUMAN
[Raw transfer]



401_A_4(2ZNQ)
PPARD_HUMAN
[Raw transfer]



3OZ_A_2(3OZ0)
PPARD_HUMAN
[Raw transfer]



DY6_A_4(3DY6)
PPARD_HUMAN
[Raw transfer]



08S_A_3(2XYW)
PPARD_HUMAN
[Raw transfer]



ET1_A_3(3ET2)
PPARD_HUMAN
[Raw transfer]



DY6_B_5(3DY6)
PPARD_HUMAN
[Raw transfer]



08S_B_5(2XYW)
PPARD_HUMAN
[Raw transfer]



Z00_B_5(2XYX)
PPARD_HUMAN
[Raw transfer]



Z00_A_3(2XYX)
PPARD_HUMAN
[Raw transfer]



1FA_A_3(2Q5G)
PPARD_HUMAN
[Raw transfer]



1FA_B_4(2Q5G)
PPARD_HUMAN
[Raw transfer]



EPA_B_4(3GWX)
PPARD_HUMAN
[Raw transfer]
17 PsiBlast_PDB 91.6794%-142 - C4 -3SP9 8.6 PPARD_HUMAN
15 PsiBlast_PDB 91.2094%-143 - C4 -3TKM 9.1 PPARD_HUMAN
35 PsiBlast_CBE 90.3294%-140 - C4 -3SP9 8.1 PPARD_HUMAN
16 PsiBlast_PDB 90.2594%-140 - C4 -2B50 7.3 PPARD_HUMAN
34 PsiBlast_CBE 90.1994%-142 - C4 -2B50 7.7 PPARD_HUMAN
1 PsiBlast_PDB 90.0993%-141 - C4 -3ET2 7.4 PPARD_HUMAN
12 PsiBlast_PDB 89.5994%-147 - C- -3GWX - PPARD_HUMAN -
9 PsiBlast_PDB 89.5194%-141 - C4 -2ZNQ 8.7 PPARD_HUMAN
30 PsiBlast_CBE 89.3494%-146 - C4 -3PEQ 10.6 PPARD_HUMAN
21 PsiBlast_CBE 89.2993%-138 - C4 -3ET2 6.8 PPARD_HUMAN
10 PsiBlast_PDB 89.1794%-142 - C4 -1Y0S 8.6 PPARD_HUMAN
13 PsiBlast_PDB 89.0994%-149 - C4 -3DY6 8.1 PPARD_HUMAN
32 PsiBlast_CBE 89.0894%-147 - C4 -3DY6 8.5 PPARD_HUMAN
11 PsiBlast_PDB 89.0194%-146 - C- -1GWX - PPARD_HUMAN -
19 PsiBlast_PDB 88.9993%-136 - C4 -3GZ9 - PPARD_HUMAN -
14 PsiBlast_PDB 88.9794%-144 - C4 -3PEQ 10.4 PPARD_HUMAN
5 PsiBlast_PDB 88.8294%-133 - C4 -2XYJ 8.4 PPARD_HUMAN
37 PsiBlast_CBE 88.6494%-142 - C4 -3D5F 8.8 PPARD_HUMAN
28 PsiBlast_CBE 88.6394%-139 - C4 -2ZNP 9.9 PPARD_HUMAN
31 PsiBlast_CBE 88.6094%-133 - C4 -3GWX 5.6 PPARD_HUMAN
24 PsiBlast_CBE 88.5494%-135 - C4 -2XYX 8.8 PPARD_HUMAN
27 PsiBlast_CBE 88.5094%-139 - C4 -2ZNQ 8.9 PPARD_HUMAN
26 PsiBlast_CBE 88.4694%-140 - C4 -2XYJ 8.4 PPARD_HUMAN
7 PsiBlast_PDB 88.3294%-141 - C4 -2XYX 8.7 PPARD_HUMAN
6 PsiBlast_PDB 88.2794%-140 - C4 -2XYW 9.6 PPARD_HUMAN
38 PsiBlast_CBE 88.1794%-142 - C4 -3D5F 9.2 PPARD_HUMAN
36 PsiBlast_CBE 88.0494%-145 - C4 -2AWH 6.7 PPARD_HUMAN
39 PsiBlast_CBE 87.8994%-145 - C4 -2BAW 6.7 PPARD_HUMAN
3 PsiBlast_PDB 87.8793%-142 - C4 -3OZ0 10.3 PPARD_HUMAN
18 PsiBlast_PDB 87.8394%-142 - C4 -2AWH 7.1 PPARD_HUMAN
8 PsiBlast_PDB 87.7894%-139 - C4 -2ZNP 9.4 PPARD_HUMAN
29 PsiBlast_CBE 87.7794%-143 - C4 -1Y0S 8.9 PPARD_HUMAN
25 PsiBlast_CBE 87.7794%-139 - C4 -2XYW 9.8 PPARD_HUMAN
23 PsiBlast_CBE 82.0093%-146 - C4 -2Q5G 11.4 PPARD_HUMAN
42 HHSearch 80.9169%-134 - C4 -3VI8 7.8 PPARA_HUMAN
4 PsiBlast_PDB 79.7093%-132 - C4 -2Q5G 11.2 PPARD_HUMAN