@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_RARG_MOUSE: (2016-03-20 )
MATNKERLFAPGALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMASLSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSKPGPHPKASSEDEAPGGQGKRGQSPQPDQGP

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

394_A_2(1EXA)
RARG_HUMAN
[Raw transfer]




184_A_2(1FCX)
RARG_HUMAN
[Raw transfer]




REA_B_2(2LBD)
RARG_HUMAN
[Raw transfer]




JYH_B_6(4JYH)
RARB_HUMAN
[Raw transfer]




1NY_A_5(4JYG)
RARB_HUMAN
[Raw transfer]




1NY_B_7(4JYG)
RARB_HUMAN
[Raw transfer]




REA_B_5(3A9E)
RARA_HUMAN
[Raw transfer]




156_A_2(1FCZ)
RARG_HUMAN
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




JYH_A_5(4JYH)
RARB_HUMAN
[Raw transfer]




254_A_2(1FD0)
RARG_HUMAN
[Raw transfer]




TTB_A_5(4DM6)
RARB_HUMAN
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




REA_J_10(1XDK)
RARB_MOUSE
[Raw transfer]




EQN_A_3(3KMR)
RARA_HUMAN
[Raw transfer]




961_A_2(1EXX)
RARG_HUMAN
[Raw transfer]




EQN_A_3(3KMR)
RARA_HUMAN
[Raw transfer]




REA_L_12(1XDK)
RARB_MOUSE
[Raw transfer]




JYI_B_6(4JYI)
RARB_HUMAN
[Raw transfer]




REA_A_5(4DM8)
RARB_HUMAN
[Raw transfer]




REA_J_10(1XDK)
RARB_MOUSE
[Raw transfer]




EQO_B_5(3KMZ)
RARA_HUMAN
[Raw transfer]




JYI_A_5(4JYI)
RARB_HUMAN
[Raw transfer]




REA_B_2(3LBD)
RARG_HUMAN
[Raw transfer]




961_B_2(4LBD)
RARG_HUMAN
[Raw transfer]




TTB_B_2(1XAP)
RARB_HUMAN
[Raw transfer]




EQO_A_10(3KMZ)
RARA_HUMAN
[Raw transfer]




LUF_C_6(4DQM)
RARA_HUMAN
[Raw transfer]




BMS_C_3(1DKF)
RARA_HUMAN
[Raw transfer]




TTB_B_6(4DM6)
RARB_HUMAN
[Raw transfer]




REA_B_6(4DM8)
RARB_HUMAN
[Raw transfer]




LUF_A_5(4DQM)
RARA_HUMAN
[Raw transfer]




1 PsiBlast_PDB 90.00100%-125 - C3 -2LBD 8.9 RARG_HUMAN
8 PsiBlast_PDB 89.71100%-131 - C3 -1FCZ 10.6 RARG_HUMAN
41 HHSearch 89.67100%-133 - C3 -1FCY 11.2 RARG_HUMAN
7 PsiBlast_PDB 89.47100%-131 - C3 -1FCX 11.4 RARG_HUMAN
4 PsiBlast_PDB 89.46100%-130 - C3 -1EXA 10.3 RARG_HUMAN
6 PsiBlast_PDB 89.39100%-132 - C3 -1FCY 11.2 RARG_HUMAN
3 PsiBlast_PDB 89.39100%-128 - C3 -4LBD 10.7 RARG_HUMAN
9 PsiBlast_PDB 89.33100%-131 - C3 -1FD0 11.0 RARG_HUMAN
5 PsiBlast_PDB 88.63100%-129 - C3 -1EXX 10.1 RARG_HUMAN
2 PsiBlast_PDB 88.31100%-122 - C3 -3LBD 8.8 RARG_HUMAN
23 PsiBlast_CBE 85.2986%-128 - C3 -4DM6 10.2 RARB_HUMAN
22 PsiBlast_CBE 85.0286%-126 - C3 -4DM8 8.5 RARB_HUMAN
20 PsiBlast_PDB 84.6583%-134 - C3 -1DKF 10.3 RARA_HUMAN
17 PsiBlast_PDB 84.4081%-125 - C3 -3A9E 8.0 RARA_HUMAN
25 PsiBlast_CBE 84.3385%-129 - C3 -4JYH 9.8 RARB_HUMAN
15 PsiBlast_PDB 84.3185%-131 - C3 -4JYH 9.7 RARB_HUMAN
16 PsiBlast_PDB 84.2185%-127 - C3 -4JYI 11.1 RARB_HUMAN
24 PsiBlast_CBE 84.0985%-127 - C3 -4JYI 11.4 RARB_HUMAN
26 PsiBlast_CBE 83.8785%-124 - C3 -4JYG 10.3 RARB_HUMAN
12 PsiBlast_PDB 83.7486%-126 - C3 -4DM6 10.1 RARB_HUMAN
34 HHSearch 83.4883%-128 - C3 -3KMR 9.7 RARA_HUMAN
13 PsiBlast_PDB 83.2786%-126 - C3 -4DM8 8.4 RARB_HUMAN
18 PsiBlast_PDB 83.2582%-128 - C3 -3KMR 9.7 RARA_HUMAN
28 PsiBlast_CBE 83.2283%-128 - C3 -4DQM 6.1 RARA_HUMAN
14 PsiBlast_PDB 83.0885%-129 - C3 -4JYG 10.3 RARB_HUMAN
29 PsiBlast_CBE 81.9583%-127 - C3 -4DQM 4.2 RARA_HUMAN
11 PsiBlast_PDB 81.8686%-126 - C3 -1XAP 10.3 RARB_HUMAN
32 HHSearch 81.3183%-117 - C3 -1XDK 8.6 RARB_MOUSE
10 PsiBlast_PDB 80.9484%-117 - C3 -1XDK 8.6 RARB_MOUSE
21 PsiBlast_CBE 80.4884%-118 - C3 -1XDK 8.6 RARB_MOUSE
19 PsiBlast_PDB 76.7282%-122 - C3 -3KMZ 11.4 RARA_HUMAN
27 PsiBlast_CBE 76.6182%-121 - C3 -3KMZ 11.1 RARA_HUMAN