@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_RXRG_RAT: (2016-03-20 )
MYGNYSHFMKFPTGFGGSPGHTGSTSMSPSVALPTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVVPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILEAELAVEPKTESYGDMSVESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT

Atome Classification :

(80 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

K08_D_6(4N8R)
?
[Raw transfer]




K09_A_5(4N5G)
?
[Raw transfer]




K08_A_5(4N8R)
?
[Raw transfer]




29V_A_3(4M8E)
RXRA_HUMAN
[Raw transfer]




9RA_A_3(4K6I)
?
[Raw transfer]




2W0_A_3(4PP5)
RXRA_HUMAN
[Raw transfer]




HXA_E_5(1MV9)
RXRA_HUMAN
[Raw transfer]




2VZ_A_3(4PP3)
RXRA_HUMAN
[Raw transfer]




3T2_A_3(4RME)
?
[Raw transfer]




R4M_A_3(4M8H)
RXRA_HUMAN
[Raw transfer]




3SV_A_3(4RMC)
?
[Raw transfer]




REA_I_9(1XDK)
RXRA_MOUSE
[Raw transfer]




2VP_A_3(4POJ)
RXRA_HUMAN
[Raw transfer]




REA_I_9(1XIU)
RXR_BIOGL
[Raw transfer]




3RB_A_3(4RFW)
?
[Raw transfer]




BM6_K_11(1MZN)
RXRA_HUMAN
[Raw transfer]




REA_K_11(1XDK)
RXRA_MOUSE
[Raw transfer]




BM6_I_9(1MZN)
RXRA_HUMAN
[Raw transfer]




1O8_A_3(4K4J)
?
[Raw transfer]




BM6_E_5(1MVC)
RXRA_HUMAN
[Raw transfer]




REA_A_3(3OAP)
RXRA_HUMAN
[Raw transfer]




REA_I_9(1FM6)
RXRA_HUMAN
[Raw transfer]




BM6_L_12(1MZN)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




REA_J_10(1FM6)
RXRA_HUMAN
[Raw transfer]




21P_A_5(2ZY0)
RXRA_HUMAN
[Raw transfer]




BM6_J_10(1MZN)
RXRA_HUMAN
[Raw transfer]




2E3_A_3(3FUG)
RXRA_HUMAN
[Raw transfer]




REA_C_3(1FBY)
RXRA_HUMAN
[Raw transfer]




9RA_A_5(3H0A)

[Raw transfer]




L79_E_5(1RDT)
RXRA_HUMAN
[Raw transfer]




4TN_A_3(2P1U)
RXRA_HUMAN
[Raw transfer]




5TN_A_3(2P1V)
RXRA_HUMAN
[Raw transfer]




REA_D_4(1FBY)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




754_A_4(3A9E)
RXRA_MOUSE
[Raw transfer]




REA_K_11(1XIU)
RXR_BIOGL
[Raw transfer]




21P_C_6(2ZY0)
RXRA_HUMAN
[Raw transfer]




REA_F_6(1FM9)
RXRA_HUMAN
[Raw transfer]




REA_E_5(1K74)
RXRA_HUMAN
[Raw transfer]




P26_A_3(2ZXZ)
RXRA_HUMAN
[Raw transfer]




2VR_A_3(4POH)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3E00)
RXRA_HUMAN
[Raw transfer]




LG2_A_5(1H9U)
RXRB_HUMAN
[Raw transfer]




LG2_B_8(1H9U)
RXRB_HUMAN
[Raw transfer]




LG2_C_11(1H9U)
RXRB_HUMAN
[Raw transfer]




OLA_D_4(1DKF)
RXRA_MOUSE
[Raw transfer]




REA_B_4(3UVV)
RXRA_HUMAN
[Raw transfer]




MEI_F_6(1UHL)

[Raw transfer]




F15_C_9(1XVP)
RXRA_HUMAN
[Raw transfer]




LG2_D_13(1H9U)

[Raw transfer]




F15_A_11(1XV9)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3DZU)
RXRA_HUMAN
[Raw transfer]




2QO_A_3(4OC7)
RXRA_HUMAN
[Raw transfer]




F15_C_10(1XV9)
RXRA_HUMAN
[Raw transfer]




REA_C_7(3FC6)
RXRA_HUMAN
[Raw transfer]




F15_A_10(1XVP)
RXRA_HUMAN
[Raw transfer]




TBY_A_3(3E94)
RXRA_HUMAN
[Raw transfer]




T9T_A_3(3KWY)
RXRA_HUMAN
[Raw transfer]




LX8_A_3(3PCU)
RXRA_HUMAN
[Raw transfer]




MLO_C_6(3R5M)
RXRA_HUMAN
[Raw transfer]




MLO_A_5(3R5M)
RXRA_HUMAN
[Raw transfer]




BGV_C_6(3OZJ)
RXRA_HUMAN
[Raw transfer]




EPH_A_2(1G2N)
?
[Raw transfer]




REA_F_6(1G5Y)
RXRA_HUMAN
[Raw transfer]




REA_E_5(1G5Y)
RXRA_HUMAN
[Raw transfer]




K08_D_6(4N8R)
?
[Raw transfer]




K09_A_5(4N5G)
RXRA_HUMAN
[Raw transfer]




K08_A_5(4N8R)
RXRA_HUMAN
[Raw transfer]




BGV_A_5(3OZJ)
RXRA_HUMAN
[Raw transfer]




K09_D_6(4N5G)
?
[Raw transfer]




NEQ_U_4(4OZT)
?
[Raw transfer]




RHN_A_7(3R2A)
RXRA_HUMAN
[Raw transfer]




RHN_C_8(3R2A)
RXRA_HUMAN
[Raw transfer]




21 PsiBlast_CBE 88.9982%-112 - C4 -4NQA - ? -
3 PsiBlast_PDB 88.8382%-108 - C4 -4NQA - RXRA_HUMAN -
2 PsiBlast_PDB 82.4371%-120 - C4 -3E00 7.8 RXRA_HUMAN
1 PsiBlast_PDB 81.3371%-120 - C4 -3DZU 7.2 RXRA_HUMAN
65 PsiBlast_CBE 80.1186%-120 - C4 -1XLS - RXRA_HUMAN -
67 PsiBlast_CBE 80.0186%-120 - C4 -1XLS - RXRA_HUMAN -
68 PsiBlast_CBE 79.9986%-119 - C4 -1XLS - RXRA_HUMAN -
58 PsiBlast_CBE 79.6986%-112 - C4 -1XVP 5.8 RXRA_HUMAN
66 PsiBlast_CBE 79.6086%-120 - C4 -1XLS - RXRA_HUMAN -
13 PsiBlast_PDB 79.0585%-120 - C4 -1MZN 9.8 RXRA_HUMAN
52 PsiBlast_CBE 78.8985%-115 - C4 -1FM9 8.6 RXRA_HUMAN
49 PsiBlast_CBE 78.8185%-114 - C4 -1K74 7.9 RXRA_HUMAN
38 PsiBlast_CBE 78.6185%-122 - C4 -1MZN 9.9 RXRA_HUMAN
61 PsiBlast_CBE 78.5186%-109 - C4 -1XV9 5.9 RXRA_HUMAN
60 PsiBlast_CBE 78.4486%-108 - C4 -1XV9 5.5 RXRA_HUMAN
54 PsiBlast_CBE 78.0485%-115 - C4 -1FM6 8.0 RXRA_HUMAN
53 PsiBlast_CBE 77.7685%-116 - C4 -1FM6 8.5 RXRA_HUMAN
64 PsiBlast_CBE 77.6184%-122 - C4 -1XDK 7.7 RXRA_MOUSE
59 PsiBlast_CBE 77.5086%-111 - C4 -1XVP 5.3 RXRA_HUMAN
78 PsiBlast_CBE 77.2487%-125 - C4 -4K4J 8.4 ?
73 PsiBlast_CBE 77.0987%-123 - C4 -4POJ 8.9 RXRA_HUMAN
43 PsiBlast_CBE 77.0385%-127 - C4 -3OZJ 2.7 RXRA_HUMAN
83 PsiBlast_CBE 76.9882%-129 - C4 -1UHL 5.9
74 PsiBlast_CBE 76.9687%-125 - C4 -4POH 8.2 RXRA_HUMAN
72 PsiBlast_CBE 76.9587%-122 - C4 -4PP3 8.8 RXRA_HUMAN
19 PsiBlast_PDB 76.9485%-122 - C4 -2ZY0 9.1 RXRA_HUMAN
12 PsiBlast_PDB 76.9385%-124 - C4 -1MVC 10.2 RXRA_HUMAN
63 PsiBlast_CBE 76.8284%-122 - C4 -1XDK 7.6 RXRA_MOUSE
71 PsiBlast_CBE 76.7787%-124 - C4 -4PP5 8.9 RXRA_HUMAN
39 PsiBlast_CBE 76.7685%-123 - C4 -1MZN 9.8 RXRA_HUMAN
36 PsiBlast_CBE 76.7685%-122 - C4 -2ZY0 9.1 RXRA_HUMAN
17 PsiBlast_PDB 76.7285%-124 - C4 -3FUG 9.7 RXRA_HUMAN
79 PsiBlast_CBE 76.6787%-122 - C4 -3OAP 7.8 RXRA_HUMAN
27 PsiBlast_CBE 76.5785%-127 - C4 -3R5M 6.6 RXRA_HUMAN
62 PsiBlast_CBE 76.5486%-121 - C4 -4RME 9.4 ?
75 PsiBlast_CBE 76.5187%-122 - C4 -4M8H 8.3 RXRA_HUMAN
76 PsiBlast_CBE 76.4787%-126 - C4 -4M8E 8.5 RXRA_HUMAN
11 PsiBlast_PDB 76.4785%-122 - C4 -1MV9 8.8 RXRA_HUMAN
108 HHSearch 76.4387%-127 - C4 -2P1T 9.7 RXRA_HUMAN
77 PsiBlast_CBE 76.4387%-122 - C4 -4K6I 9.5 ?
16 PsiBlast_PDB 76.4385%-124 - C4 -2P1V 10.2 RXRA_HUMAN
6 PsiBlast_PDB 76.4085%-124 - C4 -4OC7 7.6 RXRA_HUMAN
28 PsiBlast_CBE 76.3385%-120 - C4 -3R5M 7.2 RXRA_HUMAN
69 PsiBlast_CBE 76.3087%-120 - C4 -4RMC 8.2 ?
37 PsiBlast_CBE 76.2985%-122 - C4 -1MZN 9.8 RXRA_HUMAN
84 PsiBlast_CBE 76.2880%-112 - C4 -1XIU 8.3 RXR_BIOGL
15 PsiBlast_PDB 76.2785%-129 - C4 -2P1U 10.0 RXRA_HUMAN
70 PsiBlast_CBE 76.1287%-125 - C4 -4RFW 8.1 ?
14 PsiBlast_PDB 76.1085%-127 - C4 -2P1T 9.7 RXRA_HUMAN
42 PsiBlast_CBE 76.0485%-123 - C4 -3UVV 8.0 RXRA_HUMAN
80 PsiBlast_CBE 76.0286%-128 - C4 -3PCU 4.6 RXRA_HUMAN
44 PsiBlast_CBE 75.9285%-124 - C4 -3OZJ 4.0 RXRA_HUMAN
7 PsiBlast_PDB 75.6385%-127 - C4 -3E94 5.8 RXRA_HUMAN
18 PsiBlast_PDB 75.4385%-125 - C4 -2ZXZ 9.3 RXRA_HUMAN
8 PsiBlast_PDB 75.3285%-127 - C4 -3KWY 7.5 RXRA_HUMAN
50 PsiBlast_CBE 75.1485%-118 - C4 -1G5Y 6.3 RXRA_HUMAN
56 PsiBlast_CBE 75.0685%-123 - C4 -1RDT 9.8 RXRA_HUMAN
82 PsiBlast_CBE 74.6384%-120 - C4 -1DKF 7.3 RXRA_MOUSE
40 PsiBlast_CBE 74.1985%-115 - C4 -1FBY 8.1 RXRA_HUMAN
41 PsiBlast_CBE 73.6885%-112 - C4 -1FBY 8.0 RXRA_HUMAN
85 PsiBlast_CBE 73.6580%-114 - C4 -1XIU 8.2 RXR_BIOGL
51 PsiBlast_CBE 72.6485%-112 - C4 -1G5Y 6.5 RXRA_HUMAN
81 PsiBlast_CBE 72.4687%-109 - C4 -3H0A 8.2
87 PsiBlast_CBE 72.2283%-128 - C4 -1H9U 9.5 RXRB_HUMAN
57 PsiBlast_CBE 72.2284%-109 - C4 -3A9E 9.2 RXRA_MOUSE
26 PsiBlast_CBE 72.1285%-123 - C4 -4N5G Error ?
89 PsiBlast_CBE 71.7483%-130 - C4 -1H9U 9.7 RXRB_HUMAN
86 PsiBlast_CBE 71.6083%-126 - C4 -1H9U 9.6
88 PsiBlast_CBE 71.0983%-127 - C4 -1H9U 9.8 RXRB_HUMAN
24 PsiBlast_CBE 70.1285%-125 - C4 -4N8R Error ?
23 PsiBlast_CBE 70.1085%-127 - C4 -4N8R Error ?
32 PsiBlast_CBE 69.8785%-110 - C4 -3R2A 3.7 RXRA_HUMAN
55 PsiBlast_CBE 69.7985%-108 - C4 -3FC6 7.6 RXRA_HUMAN
90 PsiBlast_CBE 69.2574%-129 - C4 -4OZT 3.1 ?
22 PsiBlast_CBE 68.6185%-125 - C4 -4N8R 8.0 ?
30 PsiBlast_CBE 68.4385%-113 - C4 -3R2A 3.8 RXRA_HUMAN
10 PsiBlast_PDB 68.0685%-121 - C4 -4N8R 8.2 RXRA_HUMAN
9 PsiBlast_PDB 67.7685%-125 - C4 -4N5G 8.4 RXRA_HUMAN
25 PsiBlast_CBE 67.7185%-125 - C4 -4N5G 8.1 ?
124 HHSearch 64.0649%-124 - C4 -1G2N 8.1 ?