@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_STF1_HUMAN: (2016-03-20 )
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQVRARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]




PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]




P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4RWV)

[Raw transfer]




P3A_D_4(1ZDU)

[Raw transfer]




EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]




PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]




P6L_D_4(1YOK)

[Raw transfer]




EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]




PLC_A_6(4DOS)

[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




2 PsiBlast_PDB 94.1399%-156 - C2 -4QK4 9.2 STF1_HUMAN
1 PsiBlast_PDB 92.8199%-154 - C2 -4QJR 9.8 STF1_HUMAN
3 PsiBlast_PDB 92.5299%-161 - C2 -1YOW 10.2 STF1_HUMAN
21 PsiBlast_CBE 91.6399%-156 - C2 -1ZDT 11.2 STF1_HUMAN
4 PsiBlast_PDB 85.5393%-150 - C2 -1YP0 10.7 STF1_MOUSE
12 PsiBlast_PDB 84.2059%-153 - C2 -4DOS 7.7
14 PsiBlast_PDB 83.0257%-152 - C2 -1ZH7 - NR5A2_MOUSE -
5 PsiBlast_PDB 82.5659%-150 - C2 -4RWV 9.7
15 PsiBlast_PDB 82.3657%-150 - C2 -1PK5 - NR5A2_MOUSE -
11 PsiBlast_PDB 82.0260%-156 - C2 -3PLZ 7.6 NR5A2_HUMAN
7 PsiBlast_PDB 81.4859%-154 - C2 -1YUC 9.3 NR5A2_HUMAN
6 PsiBlast_PDB 80.9859%-153 - C2 -4ONI 9.6 NR5A2_HUMAN
13 PsiBlast_PDB 80.6358%-160 - C2 -4IS8 - NR5A2_HUMAN -
10 PsiBlast_PDB 78.0260%-158 - C2 -1YOK 9.1
9 PsiBlast_PDB 75.7960%-158 - C2 -1ZDU 10.4
16 PsiBlast_PDB 73.2957%-146 * C2 *3F5C - NR5A2_MOUSE -
8 PsiBlast_PDB 72.8659%-158 - C2 -4DOR - NR5A2_HUMAN -
51 Fugue 64.3527% -96 - C2 -4NQA - NR1H2_HUMAN -
18 PsiBlast_PDB 63.0032%-124 - C2 -2XHS - -
28 HHSearch 60.6237%-136 - C2 -2XHS - -