@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_VDR_BOVIN: (2016-03-20 )
MEATAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCIDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSLRPKLSEEQQRIITTLLEAHHKTYDDTYSDFSQFRPPVRNSEDEGNRPLRSILTPSFSGNSSSSCSDHCTSSPDTMEPTSFSNQDLNEEDSDDPSVTLDLSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTPEDQIVLLKSSAIEVIMLRSNQSFTLDDDMSWTCGSPDYKYQVSDVTRAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALVEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPESSMKLTPLLFEVFGNEIS

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




TFY_A_2(4ITF)
VDR_HUMAN
[Raw transfer]




TEY_A_2(4ITE)
VDR_HUMAN
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




ED9_A_2(3WGP)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3OGT)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3TKC)
?
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1DB1)
VDR_HUMAN
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




VDX_A_2(3M7R)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1IE9)
VDR_HUMAN
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




DS6_A_2(3AZ3)
VDR_HUMAN
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




ZNE_A_2(3KPZ)
VDR_HUMAN
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




KH1_B_2(1IE8)
VDR_HUMAN
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




TEJ_A_2(3A2I)
VDR_HUMAN
[Raw transfer]




3AJ_A_2(3WWR)
VDR_HUMAN
[Raw transfer]




DS3_A_2(3AZ2)
VDR_HUMAN
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




DS2_A_2(3AZ1)
VDR_HUMAN
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




TEJ_A_2(3A2J)
VDR_HUMAN
[Raw transfer]




2KB_A_2(4PA2)
VDR_HUMAN
[Raw transfer]




0VQ_A_2(4G2I)
VDR_HUMAN
[Raw transfer]




6DS_A_2(3W0C)
VDR_HUMAN
[Raw transfer]




DS5_A_2(3W0A)
VDR_HUMAN
[Raw transfer]




DS4_A_2(3W0Y)
VDR_HUMAN
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




29 PsiBlast_CBE 88.8976%-111 - C2 -3P8X 11.4 VDR_HUMAN
18 PsiBlast_PDB 88.8376%-111 - C2 -3A3Z 11.8 VDR_HUMAN
19 PsiBlast_PDB 88.7476%-112 - C2 -3A40 11.8 VDR_HUMAN
17 PsiBlast_PDB 88.5476%-111 - C2 -3CS6 11.3 VDR_HUMAN
7 PsiBlast_PDB 88.4776%-116 - C2 -4G2I 11.8 VDR_HUMAN
15 PsiBlast_PDB 88.4576%-112 - C2 -2HB8 11.4 VDR_HUMAN
14 PsiBlast_PDB 88.3476%-111 - C2 -2HB7 12.4 VDR_HUMAN
3 PsiBlast_PDB 88.3076%-110 - C2 -1IE9 11.2 VDR_HUMAN
10 PsiBlast_PDB 88.2376%-114 - C2 -1TXI 10.4 VDR_HUMAN
35 PsiBlast_CBE 88.1676%-118 - C2 -3W0C 12.8 VDR_HUMAN
9 PsiBlast_PDB 88.1376%-114 - C2 -1S19 10.9 VDR_HUMAN
31 PsiBlast_CBE 88.0776%-112 - C2 -3A2J 10.5 VDR_HUMAN
33 PsiBlast_CBE 87.9776%-114 - C2 -3WGP 12.1 VDR_HUMAN
36 PsiBlast_CBE 87.7676%-117 - C2 -3W0A 12.5 VDR_HUMAN
16 PsiBlast_PDB 87.6876%-110 - C2 -3CS4 11.6 VDR_HUMAN
34 PsiBlast_CBE 87.6676%-117 - C2 -3W0Y 13.5 VDR_HUMAN
5 PsiBlast_PDB 87.6676%-114 - C2 -3KPZ 10.8 VDR_HUMAN
6 PsiBlast_PDB 87.6376%-111 - C2 -3TKC 11.6 ?
21 PsiBlast_CBE 87.5676%-110 - C2 -4PA2 11.6 VDR_HUMAN
26 PsiBlast_CBE 87.5576%-113 - C2 -3AX8 11.3 VDR_HUMAN
4 PsiBlast_PDB 87.5276%-111 - C2 -3OGT 11.6 VDR_HUMAN
8 PsiBlast_PDB 87.4976%-114 - C2 -1S0Z 11.3 VDR_HUMAN
28 PsiBlast_CBE 87.4576%-114 - C2 -3AUQ 11.2 VDR_HUMAN
30 PsiBlast_CBE 87.3876%-114 - C2 -3A2I 10.6 VDR_HUMAN
1 PsiBlast_PDB 87.3876%-116 - C2 -1DB1 10.9 VDR_HUMAN
32 PsiBlast_CBE 87.3775%-114 - C2 -3B0T 11.2 VDR_HUMAN
27 PsiBlast_CBE 87.3276%-114 - C2 -3AUR 11.2 VDR_HUMAN
20 PsiBlast_PDB 87.2976%-112 - C2 -3A78 10.9 VDR_HUMAN
23 PsiBlast_CBE 87.2576%-116 - C2 -4ITE 12.9 VDR_HUMAN
37 PsiBlast_CBE 87.2276%-117 - C2 -3AZ3 12.5 VDR_HUMAN
11 PsiBlast_PDB 87.1876%-110 - C2 -2HAM 12.2 VDR_HUMAN
39 PsiBlast_CBE 87.1776%-117 - C2 -3AZ1 10.0 VDR_HUMAN
38 PsiBlast_CBE 87.1276%-118 - C2 -3AZ2 11.2 VDR_HUMAN
12 PsiBlast_PDB 87.0976%-113 - C2 -2HAR 12.5 VDR_HUMAN
13 PsiBlast_PDB 87.0776%-111 - C2 -2HAS 12.1 VDR_HUMAN
49 PsiBlast_CBE 87.0174%-118 - C2 -3VJS 8.8 VDR_RAT
2 PsiBlast_PDB 86.9076%-115 - C2 -1IE8 11.0 VDR_HUMAN
51 PsiBlast_CBE 86.8474%-124 - C2 -2ZL9 11.6 VDR_RAT
44 PsiBlast_CBE 86.7075%-113 - C2 -3M7R 9.6 VDR_HUMAN
24 PsiBlast_CBE 86.7076%-112 - C2 -3WWR 12.0 VDR_HUMAN
42 PsiBlast_CBE 86.6974%-124 - C2 -1RK3 11.3 VDR_RAT
48 PsiBlast_CBE 86.3574%-122 - C2 -3VJT 8.8 VDR_RAT
25 PsiBlast_CBE 86.0476%-109 - C2 -3VHW 13.0 VDR_HUMAN
41 PsiBlast_CBE 86.0174%-118 - C2 -2O4J 11.7 VDR_RAT
40 PsiBlast_CBE 85.8574%-118 - C2 -2O4R 11.3 VDR_RAT
22 PsiBlast_CBE 85.7676%-112 - C2 -4ITF 13.2 VDR_HUMAN
50 PsiBlast_CBE 85.7174%-120 - C2 -2ZLA 11.8 VDR_RAT
47 PsiBlast_CBE 85.6174%-121 - C2 -3VRU 10.3 VDR_RAT
45 PsiBlast_CBE 85.4474%-125 - C2 -3VRW 12.1 VDR_RAT
43 PsiBlast_CBE 85.4174%-118 - C2 -1RJK 11.6 VDR_RAT
46 PsiBlast_CBE 85.3974%-124 - C2 -3VRV 11.5 VDR_RAT
52 PsiBlast_CBE 84.3173%-119 - C2 -3A2H 10.5 VDR_RAT
56 HHSearch 81.9592%-128 - C2 -2O4J 10.5 VDR_RAT
57 HHSearch 81.1195%-136 - C2 -3B0T 10.2 VDR_HUMAN