@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00105_VDR_RAT: (2016-03-20 )
MEATAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIMKRKEEEALKDSLRPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSYSPRPTLSFSGNSSSSSSDLYTTSLDMMEPSGFSNLDLNGEDSDDPSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEIS

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




TFY_A_2(4ITF)
VDR_HUMAN
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3TKC)
?
[Raw transfer]




TEY_A_2(4ITE)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3OGT)
VDR_HUMAN
[Raw transfer]




ED9_A_2(3WGP)
VDR_HUMAN
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




DS6_A_2(3AZ3)
VDR_HUMAN
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1IE9)
VDR_HUMAN
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




ZNE_A_2(3KPZ)
VDR_HUMAN
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1DB1)
VDR_HUMAN
[Raw transfer]




KH1_B_2(1IE8)
VDR_HUMAN
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




VDX_A_2(3M7R)
VDR_HUMAN
[Raw transfer]




3AJ_A_2(3WWR)
VDR_HUMAN
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2I)
VDR_HUMAN
[Raw transfer]




DS3_A_2(3AZ2)
VDR_HUMAN
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




DS2_A_2(3AZ1)
VDR_HUMAN
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




6DS_A_2(3W0C)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2J)
VDR_HUMAN
[Raw transfer]




0VQ_A_2(4G2I)
VDR_HUMAN
[Raw transfer]




2KB_A_2(4PA2)
VDR_HUMAN
[Raw transfer]




DS4_A_2(3W0Y)
VDR_HUMAN
[Raw transfer]




DS5_A_2(3W0A)
VDR_HUMAN
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




6 PsiBlast_PDB 87.8284%-120 - C3 -2ZL9 11.6 VDR_RAT
8 PsiBlast_PDB 87.7184%-114 - C3 -3VJS 8.8 VDR_RAT
9 PsiBlast_PDB 87.3384%-117 - C3 -3VJT 8.7 VDR_RAT
2 PsiBlast_PDB 86.8984%-121 - C3 -1RK3 11.2 VDR_RAT
32 PsiBlast_CBE 86.8476%-109 - C3 -3A40 11.8 VDR_HUMAN
33 PsiBlast_CBE 86.6376%-110 - C3 -3A3Z 11.9 VDR_HUMAN
7 PsiBlast_PDB 86.4984%-116 - C3 -2ZLA 11.7 VDR_RAT
41 PsiBlast_CBE 86.4476%-108 - C3 -3P8X 11.3 VDR_HUMAN
35 PsiBlast_CBE 86.3476%-110 - C3 -2HB7 12.4 VDR_HUMAN
15 PsiBlast_PDB 86.3076%-108 - C3 -1IE9 11.2 VDR_HUMAN
5 PsiBlast_PDB 86.2484%-115 - C3 -3A2H 10.5 VDR_RAT
3 PsiBlast_PDB 86.2184%-115 - C3 -2O4J 11.6 VDR_RAT
44 PsiBlast_CBE 86.1976%-110 - C3 -3B0T 11.1 VDR_HUMAN
26 PsiBlast_CBE 86.1676%-109 - C3 -3CS6 11.3 VDR_HUMAN
10 PsiBlast_PDB 86.0884%-118 - C3 -3VRU 10.3 VDR_RAT
4 PsiBlast_PDB 86.0784%-113 - C3 -2O4R 11.2 VDR_RAT
17 PsiBlast_PDB 86.0576%-111 - C3 -3KPZ 10.6 VDR_HUMAN
34 PsiBlast_CBE 86.0476%-109 - C3 -2HB8 11.5 VDR_HUMAN
30 PsiBlast_CBE 86.0376%-112 - C3 -3AUQ 11.2 VDR_HUMAN
19 PsiBlast_PDB 85.8276%-114 - C3 -4G2I 11.8 VDR_HUMAN
39 PsiBlast_CBE 85.7476%-112 - C3 -1TXI 10.4 VDR_HUMAN
29 PsiBlast_CBE 85.7476%-111 - C3 -3AUR 11.1 VDR_HUMAN
52 PsiBlast_CBE 85.7376%-110 - C3 -3M7R 9.5 VDR_HUMAN
12 PsiBlast_PDB 85.6584%-122 - C3 -3VRW 11.8 VDR_RAT
27 PsiBlast_CBE 85.6276%-109 - C3 -3CS4 11.6 VDR_HUMAN
18 PsiBlast_PDB 85.5976%-108 - C3 -3TKC 11.7 ?
43 PsiBlast_CBE 85.5176%-110 - C3 -3A2J 10.5 VDR_HUMAN
16 PsiBlast_PDB 85.4976%-108 - C3 -3OGT 11.6 VDR_HUMAN
11 PsiBlast_PDB 85.4484%-120 - C3 -3VRV 11.4 VDR_RAT
40 PsiBlast_CBE 85.4376%-112 - C3 -1S19 10.8 VDR_HUMAN
47 PsiBlast_CBE 85.3876%-116 - C3 -3W0C 12.7 VDR_HUMAN
46 PsiBlast_CBE 85.3576%-115 - C3 -3W0Y 13.5 VDR_HUMAN
31 PsiBlast_CBE 85.3476%-109 - C3 -3A78 10.8 VDR_HUMAN
20 PsiBlast_PDB 85.2576%-112 - C3 -1S0Z 11.4 VDR_HUMAN
1 PsiBlast_PDB 85.2084%-113 - C3 -1RJK 11.5 VDR_RAT
42 PsiBlast_CBE 85.1276%-112 - C3 -3A2I 10.6 VDR_HUMAN
48 PsiBlast_CBE 85.0176%-116 - C3 -3W0A 12.4 VDR_HUMAN
45 PsiBlast_CBE 85.0176%-112 - C3 -3WGP 12.1 VDR_HUMAN
23 PsiBlast_CBE 85.0176%-113 - C3 -4ITE 12.9 VDR_HUMAN
13 PsiBlast_PDB 85.0076%-114 - C3 -1DB1 10.9 VDR_HUMAN
21 PsiBlast_CBE 84.9976%-108 - C3 -4PA2 11.6 VDR_HUMAN
50 PsiBlast_CBE 84.9476%-117 - C3 -3AZ2 11.3 VDR_HUMAN
28 PsiBlast_CBE 84.9476%-110 - C3 -3AX8 11.3 VDR_HUMAN
24 PsiBlast_CBE 84.9476%-111 - C3 -3WWR 12.0 VDR_HUMAN
37 PsiBlast_CBE 84.8876%-111 - C3 -2HAR 12.4 VDR_HUMAN
51 PsiBlast_CBE 84.8576%-115 - C3 -3AZ1 10.0 VDR_HUMAN
38 PsiBlast_CBE 84.7576%-108 - C3 -2HAM 12.2 VDR_HUMAN
22 PsiBlast_CBE 84.7476%-110 - C3 -4ITF 13.2 VDR_HUMAN
14 PsiBlast_PDB 84.7376%-113 - C3 -1IE8 11.2 VDR_HUMAN
49 PsiBlast_CBE 84.5576%-115 - C3 -3AZ3 12.5 VDR_HUMAN
25 PsiBlast_CBE 84.3576%-107 - C3 -3VHW 13.1 VDR_HUMAN
36 PsiBlast_CBE 84.3076%-109 - C3 -2HAS 12.1 VDR_HUMAN
56 HHSearch 82.28100%-122 - C3 -2O4J 10.5 VDR_RAT
55 HHSearch 80.5493%-127 - C3 -3B0T 10.2 VDR_HUMAN