@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : f10a_human: (2014-06-20 )
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAKSHAPEVITSSPLK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LZI_B_7(2VWM)
?
[Raw transfer]




101_L_2(U100)

[Raw transfer]

-

GSJ_A_3(2J4I)

[Raw transfer]




401_L_3(U098)

[Raw transfer]

-

GSI_A_5(2VH0)

[Raw transfer]




G15_A_3(2J94)
?
[Raw transfer]




FI1_B_3(3SW2)
?
[Raw transfer]




931_A_3(2Y81)
?
[Raw transfer]




398_X_3(U099)

[Raw transfer]

-

LZF_B_8(2VVC)
?
[Raw transfer]




LZF_A_5(2VVC)
FA10_HUMAN
[Raw transfer]




461_A_3(2WYG)
FA10_HUMAN
[Raw transfer]




701_A_3(2UWO)
FA10_HUMAN
[Raw transfer]




GSX_A_3(2J95)

[Raw transfer]




RRP_A_4(1NFU)

[Raw transfer]




GSQ_A_3(2J2U)

[Raw transfer]




895_A_3(2UWL)
?
[Raw transfer]




RTR_A_4(1NFY)
?
[Raw transfer]




815_A_4(1F0R)

[Raw transfer]




CBB_B_4(1LPK)
?
[Raw transfer]




IMA_B_4(1LPG)
?
[Raw transfer]




CMI_B_4(1LQD)
?
[Raw transfer]




CMB_B_4(1LPZ)
?
[Raw transfer]




38 PsiBlast_CBE 95.38100%-111 - C1 -2UWO 7.1 FA10_HUMAN
19 PsiBlast_PDB 94.97100%-112 - C1 -2J4I 7.1
16 PsiBlast_PDB 94.87100%-115 - C1 -2J2U 6.4
13 PsiBlast_PDB 94.72100%-107 - C1 -1P0S - ? -
20 PsiBlast_PDB 94.58100%-110 - C1 -2J94 6.7 ?
59 PsiBlast_CBE 94.5499%-107 - C1 -2VVC 9.3 FA10_HUMAN
58 PsiBlast_CBE 94.3899%-120 - C1 -2VVC 9.8 ?
9 PsiBlast_PDB 94.31100%-110 - C1 -1LPG 7.5 ?
34 PsiBlast_CBE 94.26100%-116 - C1 -2WYG 7.5 FA10_HUMAN
8 PsiBlast_PDB 94.26100%-110 - C1 -1NFY 7.0 ?
2 PsiBlast_PDB 94.11100%-109 - C1 -1F0R 6.7
40 PsiBlast_CBE 94.10100%-111 - C1 -2J95 6.8
39 PsiBlast_CBE 94.07100%-112 - C1 -2UWL 6.1 ?
36 PsiBlast_CBE 94.01100%-110 - C1 -2VH0 8.3
29 PsiBlast_CBE 93.91100%-109 - C1 -2Y81 8.6 ?
12 PsiBlast_PDB 93.91100%-110 - C1 -1LQD 8.2 ?
11 PsiBlast_PDB 93.91100%-109 - C1 -1LPZ 9.2 ?
62 PsiBlast_CBE 93.82100%-112 - C1 -3SW2 7.8 ?
5 PsiBlast_PDB 93.79100%-109 - C1 -1NFU 6.4
53 PsiBlast_CBE 93.6499%-118 - C1 -2VWM 9.3 ?


Add PDB User Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LZI_B_7(2VWM)
?
[Raw transfer]




101_L_2(U100)

[Raw transfer]

-

GSJ_A_3(2J4I)

[Raw transfer]




401_L_3(U098)

[Raw transfer]

-

GSI_A_5(2VH0)

[Raw transfer]




G15_A_3(2J94)
?
[Raw transfer]




FI1_B_3(3SW2)
?
[Raw transfer]




931_A_3(2Y81)
?
[Raw transfer]




398_X_3(U099)

[Raw transfer]

-

LZF_B_8(2VVC)
?
[Raw transfer]




LZF_A_5(2VVC)
FA10_HUMAN
[Raw transfer]




461_A_3(2WYG)
FA10_HUMAN
[Raw transfer]




701_A_3(2UWO)
FA10_HUMAN
[Raw transfer]




GSX_A_3(2J95)

[Raw transfer]




RRP_A_4(1NFU)

[Raw transfer]




GSQ_A_3(2J2U)

[Raw transfer]




895_A_3(2UWL)
?
[Raw transfer]




RTR_A_4(1NFY)
?
[Raw transfer]




815_A_4(1F0R)

[Raw transfer]




CBB_B_4(1LPK)
?
[Raw transfer]




IMA_B_4(1LPG)
?
[Raw transfer]




CMI_B_4(1LQD)
?
[Raw transfer]




CMB_B_4(1LPZ)
?
[Raw transfer]




98 -99% -55 - C1 -U098 7.7
99 -99% -54 - C1 -U099 7.4
100 -99% -57 - C1 -U100 6.7