@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : ksyk_human: (2014-06-23 )
MASSGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCHYHSQESDGLVCLLKKPFNRPQGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKADGLLRVLTVPCQKIGTQGNVNFGGRPQLPGSHPATWSAGGIISRIKSYSFPKPGHRKSSPAQGNRQESTVSFNPYEPELAPWAADKGPQREALPMDTEVYESPYADPEEIRPKEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4FL2)
KSYK_HUMAN
[Raw transfer]




985_L_2(U073)

[Raw transfer]

-

LIG_L_2(U075)

[Raw transfer]

-

LIG_L_2(U076)

[Raw transfer]

-

GSK_L_3(U077)

[Raw transfer]

-

ANP_A_2(4FL3)
KSYK_HUMAN
[Raw transfer]




STU_A_2(1XBC)

[Raw transfer]




057_B_4(3FQH)

[Raw transfer]




0K1_A_2(4DFN)

[Raw transfer]




0VH_A_2(4FZ7)

[Raw transfer]




206_L_2(U074)

[Raw transfer]

-

0VF_A_2(4FYO)

[Raw transfer]




STI_A_2(1XBB)

[Raw transfer]




0VE_A_2(4FYN)

[Raw transfer]




057_A_3(3FQH)
KSYK_HUMAN
[Raw transfer]




S19_B_7(3SRV)

[Raw transfer]




0XF_A_2(4GFG)

[Raw transfer]




0VG_A_2(4FZ6)

[Raw transfer]




0K0_A_2(4DFL)

[Raw transfer]




0JE_A_2(3VF8)

[Raw transfer]




1B4_A_2(4I0R)

[Raw transfer]




FPW_A_2(3TUC)

[Raw transfer]




1B5_A_2(4I0S)

[Raw transfer]




585_A_2(3FQS)

[Raw transfer]




477_A_2(3VF9)

[Raw transfer]




49 HHSearch 97.29100%-112 - C3 -4FL3 - KSYK_HUMAN -
2 PsiBlast_PDB 97.0999%-112 - C3 -4FL3 6.6 KSYK_HUMAN
1 PsiBlast_PDB 97.03100%-107 - C3 -4FL2 6.5 KSYK_HUMAN
50 HHSearch 77.2156% -95 - C3 -2OZO - ZAP70_HUMAN -
4 PsiBlast_PDB 77.0553% -95 - C3 -2OZO - ZAP70_HUMAN -
3 PsiBlast_PDB 76.8254% -94 - C3 -4K2R - ZAP70_HUMAN -
12 PsiBlast_PDB 57.27100%-121 - C3 -1XBB 7.4
8 PsiBlast_PDB 57.27100%-122 - C3 -3TUC 10.9
15 PsiBlast_PDB 57.16100%-120 - C3 -3FQH 7.2 KSYK_HUMAN
27 PsiBlast_CBE 57.15100%-120 - C3 -3SRV 5.9
25 PsiBlast_CBE 57.11100%-123 - C3 -4FZ7 6.9
26 PsiBlast_CBE 56.93100%-124 - C3 -3FQH 7.4
13 PsiBlast_PDB 56.88100%-119 - C3 -1XBC 9.2
6 PsiBlast_PDB 56.70100%-119 - C3 -3VF8 6.7
20 PsiBlast_PDB 56.63100%-119 - C3 -4FZ6 7.6
24 PsiBlast_CBE 56.60100%-113 - C3 -4GFG 6.1
19 PsiBlast_PDB 56.60100%-117 - C3 -4FYO 7.7
11 PsiBlast_PDB 56.56100%-117 - C3 -1XBA - KSYK_HUMAN -
28 PsiBlast_CBE 56.55100%-116 - C3 -4DFN 8.0
23 PsiBlast_CBE 56.51100%-117 - C3 -4I0R 6.0


Add PDB User Result:

(5 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4FL2)
KSYK_HUMAN
[Raw transfer]




985_L_2(U073)

[Raw transfer]

-

LIG_L_2(U075)

[Raw transfer]

-

LIG_L_2(U076)

[Raw transfer]

-

GSK_L_3(U077)

[Raw transfer]

-

ANP_A_2(4FL3)
KSYK_HUMAN
[Raw transfer]




STU_A_2(1XBC)

[Raw transfer]




057_B_4(3FQH)

[Raw transfer]




0K1_A_2(4DFN)

[Raw transfer]




0VH_A_2(4FZ7)

[Raw transfer]




206_L_2(U074)

[Raw transfer]

-

0VF_A_2(4FYO)

[Raw transfer]




STI_A_2(1XBB)

[Raw transfer]




0VE_A_2(4FYN)

[Raw transfer]




057_A_3(3FQH)
KSYK_HUMAN
[Raw transfer]




S19_B_7(3SRV)

[Raw transfer]




0XF_A_2(4GFG)

[Raw transfer]




0VG_A_2(4FZ6)

[Raw transfer]




0K0_A_2(4DFL)

[Raw transfer]




0JE_A_2(3VF8)

[Raw transfer]




1B4_A_2(4I0R)

[Raw transfer]




FPW_A_2(3TUC)

[Raw transfer]




1B5_A_2(4I0S)

[Raw transfer]




585_A_2(3FQS)

[Raw transfer]




477_A_2(3VF9)

[Raw transfer]




73 -100% -44 - C3 -U073 9.4
74 -100% -30 - C3 -U074 7.5
75 -100% -43 - C3 -U075 7.9
76 -100% -41 - C3 -U076 8.6
77 -100% -29 - C3 -U077 7.8