@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : AGRL2_HUMAN: (2016-01-09 )
MVSSGCRMRSLWFIIVISFLPNTEGFSRAALPFGLVRRELSCEGYSIDLRCPGSDVIMIESANYGRTDDKICDADPFQMENTDCYLPDAFKIMTQRCNNRTQCIVVTGSDVFPDPCPGTYKYLEVQYECVPYIFVCPGTLKAIVDSPCIYEAEQKAGAWCKDPLQAADKIYFMPWTPYRTDTLIEYASLEDFQNSRQTTTYKLPNRVDGTGFVVYDGAVFFNKERTRNIVKFDLRTRIKSGEAIINYANYHDTSPYRWGGKTDIDLAVDENGLWVIYATEQNNGMIVISQLNPYTLRFEATWETVYDKRAASNAFMICGVLYVVRSVYQDNESETGKNSIDYIYNTRLNRGEYVDVPFPNQYQYIAAVDYNPRDNQLYVWNNNFILRYSLEFGPPDPAQVPTTAVTITSSAELFKTIISTTSTTSQKGPMSTTVAGSQEGSKGTKPPPAVSTTKIPPITNIFPLPERFCEALDSKGIKWPQTQRGMMVERPCPKGTRGTASYLCMISTGTWNPKGPDLSNCTSHWVNQLAQKIRSGENAASLANELAKHTKGPVFAGDVSSSVRLMEQLVDILDAQLQELKPSEKDSAGRSYNKLQKREKTCRAYLKAIVDTVDNLLRPEALESWKHMNSSEQAHTATMLLDTLEEGAFVLADNLLEPTRVSMPTENIVLEVAVLSTEGQIQDFKFPLGIKGAGSSIQLSANTVKQNSRNGLAKLVFIIYRSLGQFLSTENATIKLGADFIGRNSTIAVNSHVISVSINKESSRVYLTDPVLFTLPHIDPDNYFNANCSFWNYSERTMMGYWSTQGCKLVDTNKTRTTCACSHLTNFAILMAHREIAYKDGVHELLLTVITWVGIVISLVCLAICIFTFCFFRGLQSDRNTIHKNLCINLFIAEFIFLIGIDKTKYAIACPIFAGLLHFFFLAAFAWMCLEGVQLYLMLVEVFESEYSRKKYYYVAGYLFPATVVGVSAAIDYKSYGTEKACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKMVKHSNTLKPDSSRLENIKSWVLGAFALLCLLGLTWSFGLLFINEETIVMAYLFTIFNAFQGVFIFIFHCALQKKVRKEYGKCFRHSYCCGGLPTESPHSSVKASTTRTSARYSSGTQSRIRRMWNDTVRKQSESSFISGDINSTSTLNQGMTGNYLLTNPLLRPHGTNNPYNTLLAETVVCNAPSAPVFNSPGHSLNNARDTSAMDTLPLNGNFNNSYSLHKGDYNDSVQVVDCGLSLNDTAFEKMIISELVHNNLRGSSKTHNLELTLPVKPVIGGSSSEDDAIVADASSLMHSDNPGLELHHKELEAPLIPQRTHSLLYQPQKKVKSEGTDSYVSQLTAEAEDHLQSPNRDSLYTSMPNLRDSPYPESSPDMEEDLSPSRRSENEDIYYKSMPNLGAGHQLQMCYQISRGNSDGYIIPINKEGCIPEGDVREGQMQLVTSL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RAA_A_3(2JXA)
LPHN1_MOUSE
[Raw transfer]



RAA_A_3(2JXA)
LPHN1_MOUSE
[Raw transfer]



CHAIN_B_2(4DLQ)

[Raw transfer]
-
RAM_A_5(2ZX2)
CSL3_ONCKE
[Raw transfer]
1 PsiBlast_PDB 96.4575% -98 - C1 -5AFB - LPHN3_MOUSE -
62 Fugue 88.1967% -87 - C1 -4DLQ 16.0
2 PsiBlast_PDB 86.4165% -86 - C1 -4DLQ - -
61 Fugue 82.3378% -76 - C1 -5CMN - ? -
6 PsiBlast_PDB 81.9276% -76 - C1 -5CMN - ? -
3 PsiBlast_PDB 80.8175% -74 - C1 -4RMK - ? -
21 PsiBlast_CBE 80.7676% -76 - C1 -5CMN - ? -
5 PsiBlast_PDB 79.9275% -73 - C1 -4YEB - ? -
22 PsiBlast_CBE 79.7976% -72 - C1 -5CMN - ? -
23 PsiBlast_CBE 79.7776% -75 - C1 -5CMN - ? -
4 PsiBlast_PDB 78.7275% -82 - C1 -4RML - ? -
9 PsiBlast_PDB 66.9839% -70 - C1 -4XAT - ? -
11 PsiBlast_PDB 64.1836% -44 - C1 -4WXS - MYOC_HUMAN -
10 PsiBlast_PDB 63.3936% -46 - C1 -4WXQ - MYOC_HUMAN -
12 PsiBlast_PDB 57.1824% -58 - C1 -4XAV - ? -
7 PsiBlast_PDB 47.4186% -18 - C1 -2JX9 - LPHN1_MOUSE -
8 PsiBlast_PDB 46.0886% -11 - C1 -2JXA 4.3 LPHN1_MOUSE
63 Fugue 45.2183% -9 * C1 *2JXA 4.3 LPHN1_MOUSE
42 HHSearch 44.6441% 19 - C1 -2ZX2 3.4 CSL3_ONCKE
14 PsiBlast_PDB 44.2339% 4 - C1 -2ZX1 - CSL3_ONCKE -