@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : AGRL3_HUMAN: (2016-01-09 )
MWPSQLLIFMMLLAPIIHAFSRAPIPMAVVRRELSCESYPIELRCPGTDVIMIESANYGRTDDKICDSDPAQMENIRCYLPDAYKIMSQRCNNRTQCAVVAGPDVFPDPCPGTYKYLEVQYECVPYKVEQKVFLCPGLLKGVYQSEHLFESDHQSGAWCKDPLQASDKIYYMPWTPYRTDTLTEYSSKDDFIAGRPTTTYKLPHRVDGTGFVVYDGALFFNKERTRNIVKFDLRTRIKSGEAIIANANYHDTSPYRWGGKSDIDLAVDENGLWVIYATEQNNGKIVISQLNPYTLRIEGTWDTAYDKRSASNAFMICGILYVVKSVYEDDDNEATGNKIDYIYNTDQSKDSLVDVPFPNSYQYIAAVDYNPRDNLLYVWNNYHVVKYSLDFGPLDSRSGQAHHGQVSYISPPIHLDSELERPSVKDISTTGPLGMGSTTTSTTLRTTTLSPGRSTTPSVSGRRNRSTSTPSPAVEVLDDMTTHLPSASSQIPALEESCEAVEAREIMWFKTRQGQIAKQPCPAGTIGVSTYLCLAPDGIWDPQGPDLSNCSSPWVNHITQKLKSGETAANIARELAEQTRNHLNAGDITYSVRAMDQLVGLLDVQLRNLTPGGKDSAARSLNKAMVETVNNLLQPQALNAWRDLTTSDQLRAATMLLHTVEESAFVLADNLLKTDIVRENTDNIKLEVARLSTEGNLEDLKFPENMGHGSTIQLSANTLKQNGRNGEIRVAFVLYNNLGPYLSTENASMKLGTEALSTNHSVIVNSPVITAAINKEFSNKVYLADPVVFTVKHIKQSEENFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTTCSCNHLTNFAVLMAHVEVKHSDAVHDLLLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNLCISLFVAELLFLIGINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKYFYLVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTAILKPESGCLDNIKSWVIGAIALLCLLGLTWAFGLMYINESTVIMAYLFTIFNSLQGMFIFIFHCVLQKKVRKEYGKCLRTHCCSGKSTESSIGSGKTSGSRTPGRYSTGSQSRIRRMWNDTVRKQSESSFITGDINSSASLNREGLLNNARDTSVMDTLPLNGNHGNSYSIASGEYLSNCVQIIDRGYNHNETALEKKILKELTSNYIPSYLNNHERSSEQNRNLMNKLVNNLGSGREDDAIVLDDATSFNHEESLGLELIHEESDAPLLPPRVYSTENHQPHHYTRRRIPQDHSESFFPLLTNEHTEDLQSPHRDSLYTSMPTLAGVAATESVTTSTQTEPPPAKCGDAEDVYYKSMPNLGSRNHVHQLHTYYQLGRGSSDGFIVPPNKDGTPPEGSSKGPAHLVTSL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RAA_A_3(2JXA)
LPHN1_MOUSE
[Raw transfer]




RAA_A_3(2JXA)
LPHN1_MOUSE
[Raw transfer]




CHAIN_B_2(4DLQ)

[Raw transfer]

-

RAM_A_5(2ZX2)
CSL3_ONCKE
[Raw transfer]




1 PsiBlast_PDB 96.9395% -90 - C2 -5AFB - LPHN3_MOUSE -
51 Fugue 81.72100% -68 - C2 -5CMN - ? -
5 PsiBlast_PDB 81.72100% -68 - C2 -5CMN - ? -
2 PsiBlast_PDB 81.2598% -72 - C2 -4RMK - ? -
4 PsiBlast_PDB 80.9298% -69 - C2 -4YEB - ? -
3 PsiBlast_PDB 80.9298% -77 - C2 -4RML - ? -
21 PsiBlast_CBE 80.42100% -68 - C2 -5CMN - ? -
22 PsiBlast_CBE 79.51100% -65 - C2 -5CMN - ? -
23 PsiBlast_CBE 79.47100% -70 - C2 -5CMN - ? -
52 Fugue 78.8453% -61 - C2 -4DLQ 10.2
6 PsiBlast_PDB 76.6050% -64 - C2 -4DLQ - -
9 PsiBlast_PDB 65.9540% -54 - C2 -4XAT - ? -
11 PsiBlast_PDB 60.3937% -39 - C2 -4WXS - MYOC_HUMAN -
10 PsiBlast_PDB 59.9737% -42 - C2 -4WXQ - MYOC_HUMAN -
12 PsiBlast_PDB 52.1629% -50 - C2 -4XAV - ? -
15 PsiBlast_PDB 47.0434% 1 - C2 -2ZX2 - CSL3_ONCKE -
7 PsiBlast_PDB 46.9381% -18 - C2 -2JX9 - LPHN1_MOUSE -
14 PsiBlast_PDB 46.3434% -1 - C2 -2ZX1 - CSL3_ONCKE -
13 PsiBlast_PDB 45.5634% -0 - C2 -2ZX0 - CSL3_ONCKE -
16 PsiBlast_PDB 45.5034% 3 - C2 -2ZX3 - CSL3_ONCKE -
54 Fugue 44.9181% -10 * C2 *2JXA 4.3 LPHN1_MOUSE
8 PsiBlast_PDB 44.8881% -9 - C2 -2JXA 4.3 LPHN1_MOUSE
31 HHSearch 41.4237% 18 - C2 -2ZX2 3.5 CSL3_ONCKE