@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CCR1_HUMAN: (2016-01-09 )
METPNTTEDYDTTTEFDYGDATPCQKVNERAFGAQLLPPLYSLVFVIGLVGNILVVLVLVQYKRLKNMTSIYLLNLAISDLLFLFTLPFWIDYKLKDDWVFGDAMCKILSGFYYTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIIIWALAILASMPGLYFSKTQWEFTHHTCSLHFPHESLREWKLFQALKLNLFGLVLPLLVMIICYTGIIKILLRRPNEKKSKAVRLIFVIMIIFFLFWTPYNLTILISVFQDFLFTHECEQSRHLDLAVQVTEVIAYTHCCVNPVIYAFVGERFRKYLRQLFHRRVAVHLVKWLPFLSVDRLERVSSTSPSTGEHELSAGF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MRV_B_11(4MBS)
CCR5_HUMAN
[Raw transfer]



MRV_A_3(4MBS)
CCR5_HUMAN
[Raw transfer]
1 PsiBlast_PDB 91.3048%-173 - C2 -4MBS 10.2 CCR5_HUMAN (first)
21 PsiBlast_CBE 91.0648%-172 - C2 -4MBS 10.0 CCR5_HUMAN (first)
2 PsiBlast_PDB 76.5331%-172 - C2 -4XT1 - US28_HCMVA -
45 Fugue 76.0628%-157 - C2 -4XNV - P2RY1_HUMAN (first) -
3 PsiBlast_PDB 75.4931%-163 - C2 -4XT3 - US28_HCMVA -
8 PsiBlast_PDB 75.1829%-174 - C2 -4RWA - C562_ECOLX (first) -
19 PsiBlast_PDB 75.1424%-164 - C2 -4XNW - RUBR_CLOPA -
9 PsiBlast_PDB 74.9829%-178 - C2 -4RWD - C562_ECOLX (first) -
27 HHSearch 74.5332%-156 - C2 -3ODU - CXCR4_HUMAN (first) -
18 PsiBlast_PDB 74.4924%-164 - C2 -4XNV - P2RY1_HUMAN (first) -
7 PsiBlast_PDB 73.8629%-176 - C2 -4N6H - OPRD_HUMAN -
29 HHSearch 73.7824%-167 - C2 -3RZE - ENLYS_BPT4 (first) -
10 PsiBlast_PDB 73.7630%-170 - C2 -4EA3 - C562_ECOLX (first) -
20 PsiBlast_PDB 72.1824%-134 - C2 -2KS9 - NK1R_HUMAN -
5 PsiBlast_PDB 71.4031%-176 - C2 -5C1M - ? -
35 HHSearch 70.7022%-170 * C2 *3PBL - DRD3_HUMAN (first) -
32 HHSearch 70.0422%-164 - C2 -2RH1 - ADRB2_HUMAN (first) -
48 Fugue 69.1019%-124 - C2 -1F88 - OPSD_BOVIN -
28 HHSearch 68.8720%-172 - C2 -3UON - ACM2_HUMAN (first) -
36 HHSearch 68.0522%-148 - C2 -2Z73 - OPSD_TODPA -