@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CCR5_HUMAN: (2016-01-09 )
MDYQVSSPIYDINYYTSEPCQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPGIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRCRNEKKRHRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEKFRNYLLVFFQKHIAKRFCKCCSIFQQEAPERASSVYTRSTGEQEISVGL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MRV_A_3(4MBS)
CCR5_HUMAN
[Raw transfer]




MRV_B_11(4MBS)
CCR5_HUMAN
[Raw transfer]




21 PsiBlast_CBE 95.5385%-179 - C2 -4MBS 11.3 CCR5_HUMAN (first)
1 PsiBlast_PDB 95.5185%-177 - C2 -4MBS 11.2 CCR5_HUMAN (first)
26 HHSearch 71.8132%-154 - C2 -3ODU - CXCR4_HUMAN (first) -
3 PsiBlast_PDB 71.5628%-169 - C2 -4XT1 - US28_HCMVA -
12 PsiBlast_PDB 71.2526%-167 - C2 -4N6H - C562_ECOLX (first) -
14 PsiBlast_PDB 71.1027%-180 - C2 -4RWD - C562_ECOLX (first) -
46 Fugue 71.0225%-158 - C2 -4XNV - P2RY1_HUMAN (first) -
13 PsiBlast_PDB 70.6727%-178 - C2 -4RWA - C562_ECOLX (first) -
27 HHSearch 70.1521%-168 - C2 -3UON - ACM2_HUMAN (first) -
4 PsiBlast_PDB 69.7828%-164 - C2 -4XT3 - US28_HCMVA -
10 PsiBlast_PDB 68.9029%-173 - C2 -4EA3 - C562_ECOLX (first) -
11 PsiBlast_PDB 68.7226%-165 - C2 -5C1M - ? -
44 Fugue 68.7120%-136 - C2 -1F88 - OPSD_BOVIN -
30 HHSearch 68.4224%-163 * C2 *2RH1 - ADRB2_HUMAN (first) -
37 HHSearch 68.3224%-153 - C2 -2Z73 - OPSD_TODPA -
36 HHSearch 68.2423%-174 - C2 -3PBL - DRD3_HUMAN (first) -
28 HHSearch 67.2822%-170 - C2 -3RZE - ENLYS_BPT4 (first) -
33 HHSearch 66.8122%-160 - C2 -3EML - ENLYS_BPT4 -
19 PsiBlast_PDB 66.0922%-156 - C2 -4XNW - RUBR_CLOPA -
38 HHSearch 66.0618%-159 - C2 -3V2Y - ENLYS_BPT4 -