@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CRFR2_HUMAN: (2016-01-09 )
MDAALLHSLLEANCSLALAEELLLDGWGPPLDPEGPYSYCNTTLDQIGTCWPRSAAGALVERPCPEYFNGVKYNTTRNAYRECLENGTWASKINYSQCEPILDDKQRKYDLHYRIALVVNYLGHCVSVAALVAAFLLFLALRSIRCLRNVIHWNLITTFILRNVMWFLLQLVDHEVHESNEVWCRCITTIFNYFVVTNFFWMFVEGCYLHTAIVMTYSTERLRKCLFLFIGWCIPFPIIVAWAIGKLYYENEQCWFGKEPGDLVDYIYQGPIILVLLINFVFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITYMLFFVNPGEDDLSQIMFIYFNSFLQSFQGFFVSVFYCFFNGEVRSAVRKRWHRWQDHHSLRVPMARAMSIPTSPTRISFHSIKQTAAV

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_D_4(3EHU)
CRFR1_HUMAN
[Raw transfer]
-
CHAIN_E_5(3N96)
CRFR2_HUMAN
[Raw transfer]
-
CHAIN_F_6(3N95)

[Raw transfer]
-
CHAIN_G_7(3N96)
CRFR2_HUMAN
[Raw transfer]
-
CHAIN_C_3(3N93)

[Raw transfer]
-
CHAIN_F_6(3N96)

[Raw transfer]
-
CHAIN_E_5(3N95)
CRFR2_HUMAN
[Raw transfer]
-
CHAIN_H_8(3N96)
CRFR2_HUMAN
[Raw transfer]
-
CHAIN_B_2(2JND)
CRFR2_MOUSE
[Raw transfer]
-
CHAIN_D_4(3EHU)

[Raw transfer]
-
CHAIN_B_2(3EHT)

[Raw transfer]
-
65 Fugue 90.8572%-179 - C3 -4K5Y - CRFR1_HUMAN (first) -
21 PsiBlast_CBE 61.5079%-133 - C3 -4K5Y - CRFR1_HUMAN -
2 PsiBlast_PDB 61.43100% -76 - C4 -3N93 - CRFR2_HUMAN -
4 PsiBlast_PDB 61.20100% -80 - C4 -3N96 4.2 CRFR2_HUMAN
23 PsiBlast_CBE 60.83100% -80 - C4 -3N96 6.1
3 PsiBlast_PDB 60.39100% -79 - C4 -3N95 - CRFR2_HUMAN -
24 PsiBlast_CBE 59.75100% -73 - C4 -3N96 5.5 CRFR2_HUMAN
25 PsiBlast_CBE 59.66100% -77 - C4 -3N96 3.8 CRFR2_HUMAN
29 PsiBlast_CBE 59.40100% -74 - C4 -3N93 5.0
26 PsiBlast_CBE 58.77100% -71 - C4 -3N95 4.0
27 PsiBlast_CBE 57.33100% -71 - C4 -3N95 4.2 CRFR2_HUMAN
8 PsiBlast_PDB 55.0234%-159 - C3 -4L6R - GLR_HUMAN -
49 HHSearch 54.4011%-140 * C3 *2Z73 - OPSD_TODPA -
72 Fugue 52.4512%-100 - C3 -4JKV - C562_ECOLX (first) -
50 HHSearch 51.4111%-137 - C3 -3ODU - CXCR4_HUMAN (first) -
57 HHSearch 50.4213%-132 - C3 -2KS9 - NK1R_HUMAN -
53 HHSearch 49.359%-134 - C3 -3UON - ACM2_HUMAN (first) -
11 PsiBlast_PDB 48.2561% -23 - C4 -3EHU Error CRFR1_HUMAN (first)
55 HHSearch 47.7310%-130 - C3 -1U19 - OPSD_BOVIN -
71 Fugue 47.2211%-116 - C2 -2WE8 - ? -
30 PsiBlast_CBE 46.7561% -16 - C4 -3EHU 3.6
5 PsiBlast_PDB 43.1991% -18 - C4 -2JND 3.9 CRFR2_MOUSE
9 PsiBlast_PDB 39.4161% 5 - C4 -3EHT 3.5