@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CXCR4_HUMAN: (2016-01-09 )
MEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSVSRGSSLKILSKGKRGGHSSVSTESESSSFHSS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ITD_A_3(3ODU)
CXCR4_HUMAN
[Raw transfer]




ITD_A_3(3ODU)
CXCR4_HUMAN
[Raw transfer]




34 HHSearch 89.0098%-159 - C5 -3ODU 4.6 CXCR4_HUMAN (first)
52 Fugue 76.0068%-123 - C5 -3ODU 4.5 CXCR4_HUMAN (first)
8 PsiBlast_PDB 67.9027%-147 - C5 -4MBS - CCR5_HUMAN (first) -
13 PsiBlast_PDB 64.5727%-159 - C5 -4RWD - C562_ECOLX (first) -
11 PsiBlast_PDB 63.7626%-151 - C5 -4N6H - C562_ECOLX (first) -
54 Fugue 63.6226%-145 - C5 -4XNV - P2RY1_HUMAN (first) -
9 PsiBlast_PDB 63.5629%-151 - C5 -4EA3 - C562_ECOLX (first) -
21 PsiBlast_CBE 63.2699%-156 - C5 -3ODU - CXCR4_HUMAN (first) -
2 PsiBlast_PDB 63.1899%-158 - C5 -3OE0 - CXCR4_HUMAN (first) -
35 HHSearch 63.0321%-133 * C5 *3UON - ACM2_HUMAN (first) -
4 PsiBlast_PDB 62.9698%-166 - C5 -4RWS - CXCR4_HUMAN (first) -
1 PsiBlast_PDB 62.9099%-155 - C5 -3ODU - CXCR4_HUMAN (first) -
12 PsiBlast_PDB 62.7227%-157 - C5 -4RWA - C562_ECOLX (first) -
3 PsiBlast_PDB 62.7299%-171 - C5 -3OE9 - CXCR4_HUMAN (first) -
7 PsiBlast_PDB 62.5531%-149 - C5 -4XT3 - US28_HCMVA -
41 HHSearch 61.9324%-139 - C5 -2KS9 - NK1R_HUMAN -
56 Fugue 61.7920%-101 - C5 -1F88 - OPSD_BOVIN -
6 PsiBlast_PDB 61.7631%-153 - C5 -4XT1 - US28_HCMVA -
22 PsiBlast_CBE 61.5599%-165 - C5 -3OE9 - CXCR4_HUMAN (first) -
45 HHSearch 60.9020%-122 - C5 -2Z73 - OPSD_TODPA -