@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : FZD1_HUMAN: (2016-01-09 )
MAEEEAPKKSRAAGGGASWELCAGALSARLAEEGSGDAGGRRRPPVDPRRLARQLLLLLWLLEAPLLLGVRAQAAGQGPGQGPGPGQQPPPPPQQQQSGQQYNGERGISVPDHGYCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSAELKFFLCSMYAPVCTVLEQALPPCRSLCERARQGCEALMNKFGFQWPDTLKCEKFPVHGAGELCVGQNTSDKGTPTPSLLPEFWTSNPQHGGGGHRGGFPGGAGASERGKFSCPRALKVPSYLNYHFLGEKDCGAPCEPTKVYGLMYFGPEELRFSRTWIGIWSVLCCASTLFTVLTYLVDMRRFSYPERPIIFLSGCYTAVAVAYIAGFLLEDRVVCNDKFAEDGARTVAQGTKKEGCTILFMMLYFFSMASSIWWVILSLTWFLAAGMKWGHEAIEANSQYFHLAAWAVPAIKTITILALGQVDGDVLSGVCFVGLNNVDALRGFVLAPLFVYLFIGTSFLLAGFVSLFRIRTIMKHDGTKTEKLEKLMVRIGVFSVLYTVPATIVIACYFYEQAFRDQWERSWVAQSCKSYAIPCPHLQAGGGAPPHPPMSPDFTVFMIKYLMTLIVGITSGFWIWSGKTLNSWRKFYTRLTNSKQGETTV

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAG_D_9(5BPQ)
FZD4_HUMAN
[Raw transfer]



NAG_A_5(5BPQ)
FZD4_HUMAN
[Raw transfer]



NAG_C_6(5BQE)
FZD4_HUMAN
[Raw transfer]



NAG_A_5(5BPB)
FZD4_HUMAN
[Raw transfer]



NAG_D_8(5BPB)
FZD4_HUMAN
[Raw transfer]



NAG_C_8(5BPQ)
FZD4_HUMAN
[Raw transfer]



NAG_B_7(5BPQ)
FZD4_HUMAN
[Raw transfer]



NAG_B_3(5BQC)
FZD4_HUMAN
[Raw transfer]
51 Fugue 80.3926% -99 - C6 -4JKV - C562_ECOLX (first) -
1 PsiBlast_PDB 77.7030%-134 - C6 -4JKV - C562_ECOLX (first) -
2 PsiBlast_PDB 77.3730%-133 - C6 -4N4W - SMO_HUMAN -
56 Fugue 72.9618% -80 - C1 -4TUU - PK3CA_HUMAN -
52 Fugue 65.3052%-107 * C4 *1IJY - FZD8_MOUSE -
4 PsiBlast_PDB 64.9852%-107 - C4 -1IJY - FZD8_MOUSE -
53 Fugue 64.7652%-102 - C4 -1IJY - FZD8_MOUSE -
26 HHSearch 64.3952% -99 - C4 -1IJY - FZD8_MOUSE -
3 PsiBlast_PDB 63.7955%-107 - C4 -4F0A - FZD8_MOUSE -
27 HHSearch 62.5142%-107 - C4 -1IJX - SFRP3_MOUSE -
7 PsiBlast_PDB 61.6032%-133 - C6 -4QIN - C562_ECOLX (first) -
20 PsiBlast_CBE 61.2245%-107 - C4 -5CL1 - ? -
24 PsiBlast_CBE 61.0140% -98 - C4 -5BPB 3.0 FZD4_HUMAN
8 PsiBlast_PDB 60.9646%-107 - C4 -1IJX - SFRP3_MOUSE -
21 PsiBlast_CBE 60.8940% -99 - C4 -5BPQ 3.2 FZD4_HUMAN
9 PsiBlast_PDB 60.8245%-107 - C4 -5CL1 - ? -
25 PsiBlast_CBE 60.4845%-114 - C4 -5CM4 - ? -
14 PsiBlast_PDB 60.1145%-109 - C4 -5CM4 - ? -
11 PsiBlast_PDB 60.0640%-103 - C4 -5BPQ 2.5 FZD4_HUMAN
10 PsiBlast_PDB 59.4940%-105 - C4 -5BPB 3.0 FZD4_HUMAN
13 PsiBlast_PDB 59.1140%-105 - C4 -5BQE 2.4 FZD4_HUMAN
23 PsiBlast_CBE 58.5440% -98 - C4 -5BPQ 3.0 FZD4_HUMAN
22 PsiBlast_CBE 58.2840% -97 - C4 -5BPQ 3.0 FZD4_HUMAN
12 PsiBlast_PDB 57.7840% -92 - C4 -5BQC 2.4 FZD4_HUMAN