@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GRM8_HUMAN: (2016-01-10 )
MVCEGKRSASCPCFFLLTAKFYWILTMMQRTHSQEYAHSIRVDGDIILGGLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLETPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMHKDLCPGYIGLCPRMSTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAPGRYDIFQYQITNKSTEYKVIGHWTNQLHLKVEDMQWAHREHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQRPNMNRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLTGIFLCYSITFLMIAAPDTIICSFRRVFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISVQLLGVFVWFVVDPPHIIIDYGEQRTLDPEKARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHPEQNVQKRKRSFKAVVTAATMQSKLIQKGNDRPNGEVKSELCESLETNTSSTKTTYISYSNHSI

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

52Q_B_5(5CNJ)
?
[Raw transfer]




52Q_A_4(5CNJ)
?
[Raw transfer]




40H_B_4(4XAS)
GRM2_HUMAN
[Raw transfer]




2CG_F_6(2E4V)
GRM3_RAT
[Raw transfer]




40F_A_2(4XAR)
GRM3_HUMAN
[Raw transfer]




2CG_E_5(2E4V)
GRM3_RAT
[Raw transfer]




GGL_A_3(5CNI)
?
[Raw transfer]




40H_A_3(4XAS)
GRM2_HUMAN
[Raw transfer]




GGL_B_8(5CNI)
?
[Raw transfer]




GLU_F_6(2E4U)
GRM3_RAT
[Raw transfer]




GLU_B_9(3LMK)
GRM5_HUMAN
[Raw transfer]




C5B_F_6(2E4X)
GRM3_RAT
[Raw transfer]




C5A_E_5(2E4W)
GRM3_RAT
[Raw transfer]




C5A_F_6(2E4W)
GRM3_RAT
[Raw transfer]




GLU_E_5(2E4U)
GRM3_RAT
[Raw transfer]




C5B_E_5(2E4X)
GRM3_RAT
[Raw transfer]




GLU_E_5(2E4U)
GRM3_RAT
[Raw transfer]




52A_E_5(2E4Y)
GRM3_RAT
[Raw transfer]




GLU_E_5(2E4U)
GRM3_RAT
[Raw transfer]




52A_D_4(2E4Y)
GRM3_RAT
[Raw transfer]




Z99_A_7(3SM9)
GRM3_HUMAN
[Raw transfer]




Z99_A_7(3SM9)
GRM3_HUMAN
[Raw transfer]




52Q_A_2(5CNM)
?
[Raw transfer]




Z99_B_7(3KS9)
GRM1_HUMAN
[Raw transfer]




GLU_B_10(1EWK)
GRM1_RAT
[Raw transfer]




MES_C_3(2E4Z)
GRM7_RAT
[Raw transfer]




MCG_C_3(1ISS)
GRM1_RAT
[Raw transfer]




MCG_D_4(1ISS)
GRM1_RAT
[Raw transfer]




1 PsiBlast_PDB 94.5271% -98 - C2 -2E4Z 3.1 GRM7_RAT
3 PsiBlast_PDB 88.1546% -78 - C2 -2E4V 4.6 GRM3_RAT
4 PsiBlast_PDB 88.0646% -81 - C2 -2E4W 4.4 GRM3_RAT
5 PsiBlast_PDB 87.7846% -76 - C2 -2E4X 4.7 GRM3_RAT
23 PsiBlast_CBE 87.7746% -78 - C2 -2E4W 4.4 GRM3_RAT
61 Fugue 87.6548% -76 - C2 -2E4U 4.9 GRM3_RAT
22 PsiBlast_CBE 87.6346% -78 - C2 -2E4X 4.5 GRM3_RAT
24 PsiBlast_CBE 87.1446% -78 - C2 -2E4V 4.6 GRM3_RAT
25 PsiBlast_CBE 86.9546% -80 - C2 -2E4U 4.3 GRM3_RAT
6 PsiBlast_PDB 86.9546% -77 - C2 -2E4Y 4.0 GRM3_RAT
2 PsiBlast_PDB 86.9346% -80 - C2 -2E4U 4.9 GRM3_RAT
38 HHSearch 85.9846% -79 - C2 -2E4U 4.9 GRM3_RAT
60 Fugue 85.6944% -80 - C2 -1EWK - GRM1_RAT -
10 PsiBlast_PDB 85.0947% -94 - C2 -3SM9 7.7 GRM3_HUMAN
9 PsiBlast_PDB 84.5047% -98 - C2 -5CNM 3.9 ?
39 HHSearch 84.3847% -92 - C2 -3SM9 7.7 GRM3_HUMAN
34 PsiBlast_CBE 84.2743% -83 - C2 -1EWK 2.9 GRM1_RAT
33 PsiBlast_CBE 83.8343% -86 - C2 -1EWT - GRM1_RAT -
27 PsiBlast_CBE 83.6947% -88 - C2 -5CNK - ? -
15 PsiBlast_PDB 83.4343% -75 - C2 -1EWK - GRM1_RAT -
35 PsiBlast_CBE 83.3642% -87 - C2 -3KS9 5.1 GRM1_HUMAN
7 PsiBlast_PDB 83.1447% -87 - C2 -4XAR 5.3 GRM3_HUMAN
12 PsiBlast_PDB 82.8143% -87 - C2 -4XAS 5.0 GRM2_HUMAN
28 PsiBlast_CBE 82.7543% -86 - C2 -5CNJ 6.2 ?
13 PsiBlast_PDB 82.5243% -85 - C2 -5CNI 4.4 ?
21 PsiBlast_CBE 82.4046% -80 - C2 -2E4Y 4.2 GRM3_RAT
11 PsiBlast_PDB 82.1143% -88 - C2 -5CNJ 6.8 ?
30 PsiBlast_CBE 81.7243% -87 - C2 -4XAS 5.4 GRM2_HUMAN
32 PsiBlast_CBE 81.5843% -83 - C2 -1ISS 2.5 GRM1_RAT
19 PsiBlast_PDB 81.5743% -84 - C2 -1ISS 2.2 GRM1_RAT
29 PsiBlast_CBE 81.4643% -84 - C2 -5CNI 4.6 ?
31 PsiBlast_CBE 81.2542% -77 - C2 -3LMK 4.7 GRM5_HUMAN