@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : OPRD_HUMAN: (2016-01-12 )
MEPAPSAGAELQPPLFANASDAYPSACPSAGANASGPPGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLCRKPCGRPDPSSFSRAREATARERVTACTPSDGPGGGAAA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0NN_B_6(4EA3)
C562_ECOLX
[Raw transfer]




CHAIN_G_3(4RWD)
C562_ECOLX
[Raw transfer]

-

CHAIN_G_3(4RWA)
C562_ECOLX
[Raw transfer]

-

1 PsiBlast_PDB 96.0499%-164 - C2 -4N6H - C562_ECOLX (first) -
21 PsiBlast_CBE 95.69100%-167 - C2 -4RWD 8.5 C562_ECOLX (first)
2 PsiBlast_PDB 95.65100%-168 - C2 -4RWA - C562_ECOLX (first) -
3 PsiBlast_PDB 95.19100%-168 - C2 -4RWD - C562_ECOLX (first) -
22 PsiBlast_CBE 94.73100%-169 - C2 -4RWA 7.7 C562_ECOLX (first)
5 PsiBlast_PDB 84.1371%-170 - C2 -5C1M - ? -
23 PsiBlast_CBE 80.3159%-161 - C2 -4EA3 6.4 C562_ECOLX (first)
6 PsiBlast_PDB 79.8959%-159 - C2 -4EA3 - C562_ECOLX (first) -
27 HHSearch 73.1226%-141 - C2 -2RH1 - ADRB2_HUMAN (first) -
25 HHSearch 72.3425%-146 - C2 -3ODU - CXCR4_HUMAN (first) -
26 HHSearch 71.5826%-143 - C2 -3UON - ACM2_HUMAN (first) -
12 PsiBlast_PDB 70.9224%-161 - C2 -4MBS - CCR5_HUMAN (first) -
19 PsiBlast_PDB 70.2428%-141 - C2 -2KSB - NK1R_HUMAN -
18 PsiBlast_PDB 70.2428%-141 - C2 -2KSA - NK1R_HUMAN -
17 PsiBlast_PDB 70.2428%-141 - C2 -2KS9 - NK1R_HUMAN -
34 HHSearch 70.1623%-139 - C2 -3EML - ENLYS_BPT4 -
29 HHSearch 70.1026%-138 - C2 -3RZE - ENLYS_BPT4 (first) -
35 HHSearch 69.9826%-152 - C2 -3PBL - DRD3_HUMAN (first) -
45 Fugue 69.6018%-123 - C2 -1F88 - OPSD_BOVIN -
47 Fugue 69.4228%-142 - C2 -4XNV - P2RY1_HUMAN (first) -