@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : OPRK_HUMAN: (2016-01-12 )
MDSPIQIFRGEPGPTCAPSACLPPNSSAWFPGWAEPDSNGSAGSEDAQLEPAHISPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVISIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSGSREKDRNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCFPLKMRMERQSTSRVRNTVQDPAYLRDIDGMNKPV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0NN_A_3(4EA3)
C562_ECOLX
[Raw transfer]




0NN_B_6(4EA3)
C562_ECOLX
[Raw transfer]




4VO_A_3(5C1M)
?
[Raw transfer]




CHAIN_H_4(4RWA)
C562_ECOLX
[Raw transfer]

-

CHAIN_H_4(4RWD)
C562_ECOLX
[Raw transfer]

-

EJ4_A_20(4N6H)
C562_ECOLX
[Raw transfer]




CHAIN_G_3(4RWD)
C562_ECOLX
[Raw transfer]

-

CHAIN_G_3(4RWA)
C562_ECOLX
[Raw transfer]

-

3 PsiBlast_PDB 97.1568%-163 - C2 -4RWA 5.4 C562_ECOLX (first)
23 PsiBlast_CBE 96.5168%-161 - C2 -4RWD 4.4 C562_ECOLX (first)
2 PsiBlast_PDB 96.2466%-156 - C2 -4N6H 5.9 C562_ECOLX (first)
4 PsiBlast_PDB 96.1368%-162 - C2 -4RWD 4.9 C562_ECOLX (first)
24 PsiBlast_CBE 95.9868%-163 - C2 -4RWA 4.5 C562_ECOLX (first)
22 PsiBlast_CBE 91.3669%-165 - C2 -5C1M 7.4 ?
25 PsiBlast_CBE 90.7961%-160 - C2 -4EA3 7.8 C562_ECOLX (first)
5 PsiBlast_PDB 88.4061%-155 - C2 -4EA3 8.5 C562_ECOLX (first)
29 HHSearch 82.0228%-140 - C2 -3RZE - ENLYS_BPT4 (first) -
30 HHSearch 80.0525%-138 - C2 -2RH1 - ADRB2_HUMAN (first) -
38 HHSearch 78.7225%-147 * C2 *3PBL - DRD3_HUMAN (first) -
21 PsiBlast_CBE 77.8198%-166 - C2 -4DJH - ENLYS_BPT4 (first) -
26 HHSearch 77.5127%-142 - C2 -3UON - ACM2_HUMAN (first) -
27 HHSearch 77.2426%-153 - C2 -3ODU - CXCR4_HUMAN (first) -
1 PsiBlast_PDB 76.8298%-166 - C2 -4DJH - ENLYS_BPT4 (first) -
8 PsiBlast_PDB 76.5126%-155 - C2 -4MBS - CCR5_HUMAN (first) -
44 Fugue 76.1928%-147 - C2 -4XNV - P2RY1_HUMAN (first) -
35 HHSearch 74.6323%-134 - C2 -3EML - ENLYS_BPT4 -
51 Fugue 72.8722%-129 - C2 -3ODU - CXCR4_HUMAN (first) -
11 PsiBlast_PDB 72.5627%-140 - C2 -4XNW - RUBR_CLOPA -