@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : OPSD_HUMAN: (2016-01-12 )
MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BNG_B_9(1L9H)
OPSD_BOVIN
[Raw transfer]



BGL_A_8(3CAP)
OPSD_BOVIN
[Raw transfer]



BNG_B_9(1HZX)
OPSD_BOVIN
[Raw transfer]



HTO_B_26(2PED)
OPSD_BOVIN
[Raw transfer]



HTO_B_26(2HPY)
OPSD_BOVIN
[Raw transfer]



HTG_A_17(3OAX)
OPSD_BOVIN
[Raw transfer]



HTO_B_26(1U19)
OPSD_BOVIN
[Raw transfer]



HTO_B_26(2G87)
OPSD_BOVIN
[Raw transfer]



4E6_A_15(3OAX)
OPSD_BOVIN
[Raw transfer]



HTG_A_17(3OAX)
OPSD_BOVIN
[Raw transfer]



BNG_B_9(1HZX)
OPSD_BOVIN
[Raw transfer]



BNG_B_9(1L9H)
OPSD_BOVIN
[Raw transfer]
3 PsiBlast_PDB 93.1093%-143 - C8 -1F88 - OPSD_BOVIN -
59 Fugue 92.7892%-140 - C8 -1F88 - OPSD_BOVIN -
4 PsiBlast_PDB 91.4193%-158 - C8 -3DQB - GNAT1_BOVIN (first) -
22 PsiBlast_CBE 90.6293%-158 - C8 -3CAP Error OPSD_BOVIN
5 PsiBlast_PDB 89.8393%-161 - C8 -3PQR - OPSD_BOVIN -
7 PsiBlast_PDB 89.4793%-160 - C8 -4J4Q - GNAT1_BOVIN (first) -
6 PsiBlast_PDB 89.4493%-159 - C8 -3PXO - OPSD_BOVIN -
8 PsiBlast_PDB 89.3493%-162 - C8 -4PXF - OPSD_BOVIN -
1 PsiBlast_PDB 89.3393%-157 - C8 -3CAP - OPSD_BOVIN -
12 PsiBlast_PDB 88.6493%-151 - C8 -2I36 - OPSD_BOVIN -
20 PsiBlast_PDB 88.4693%-141 - C- -3C9M - OPSD_BOVIN -
2 PsiBlast_PDB 88.3393% -82 - C- -3C9L - OPSD_BOVIN -
33 PsiBlast_CBE 88.2493%-156 - C8 -1F88 - OPSD_BOVIN -
14 PsiBlast_PDB 88.0693%-153 - C8 -2I37 - OPSD_BOVIN -
13 PsiBlast_PDB 87.7393% -82 - C- -2I35 - OPSD_BOVIN -
25 PsiBlast_CBE 87.4993%-151 - C8 -2I37 - OPSD_BOVIN -
24 PsiBlast_CBE 87.3993%-152 - C8 -2I37 - OPSD_BOVIN -
26 PsiBlast_CBE 87.1493%-151 - C8 -2I36 - OPSD_BOVIN -
9 PsiBlast_PDB 85.5693%-106 - C8 -3OAX 3.4 OPSD_BOVIN
16 PsiBlast_PDB 85.3593%-105 - C8 -2PED - OPSD_BOVIN -
23 PsiBlast_CBE 84.7793%-102 - C8 -2PED 3.3 OPSD_BOVIN
21 PsiBlast_CBE 84.5993%-105 - C8 -3OAX 2.7 OPSD_BOVIN
28 PsiBlast_CBE 84.4193%-103 - C8 -2G87 2.4 OPSD_BOVIN
29 PsiBlast_CBE 84.0693%-105 - C8 -1U19 2.4 OPSD_BOVIN
18 PsiBlast_PDB 83.9993%-114 - C8 -1L9H Error OPSD_BOVIN
11 PsiBlast_PDB 83.9493%-110 - C8 -1HZX Error OPSD_BOVIN
27 PsiBlast_CBE 83.5693%-102 - C8 -2HPY 3.4 OPSD_BOVIN
30 PsiBlast_CBE 79.5693%-121 - C8 -1L9H 2.2 OPSD_BOVIN
31 PsiBlast_CBE 79.1993%-119 - C8 -1HZX 2.6 OPSD_BOVIN