@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : OPSG_HUMAN: (2016-01-12 )
MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPNYHIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNVRFDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYPFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLFGKKVDDGSELSSASKTEVSSVSSVSPA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BNG_B_9(1L9H)
OPSD_BOVIN
[Raw transfer]




BNG_B_9(1HZX)
OPSD_BOVIN
[Raw transfer]




BNG_A_7(1HZX)
OPSD_BOVIN
[Raw transfer]




HTG_A_17(3OAX)
OPSD_BOVIN
[Raw transfer]




HTO_B_26(2PED)
OPSD_BOVIN
[Raw transfer]




HTO_B_26(2HPY)
OPSD_BOVIN
[Raw transfer]




HTO_B_26(1U19)
OPSD_BOVIN
[Raw transfer]




HTO_B_26(2G87)
OPSD_BOVIN
[Raw transfer]




PLM_A_13(3CAP)
OPSD_BOVIN
[Raw transfer]




7 PsiBlast_PDB 93.9743%-137 - C10 -4J4Q - GNAT1_BOVIN (first) -
4 PsiBlast_PDB 93.8343%-140 - C10 -3DQB - GNAT1_BOVIN (first) -
8 PsiBlast_PDB 93.5643%-141 - C10 -4PXF - OPSD_BOVIN -
6 PsiBlast_PDB 93.3843%-139 - C10 -3PXO - OPSD_BOVIN -
60 Fugue 93.2642%-118 * C10 *1F88 - OPSD_BOVIN -
22 PsiBlast_CBE 93.1843%-138 - C10 -3CAP 3.1 OPSD_BOVIN
5 PsiBlast_PDB 93.0743%-139 - C10 -3PQR - OPSD_BOVIN -
3 PsiBlast_PDB 92.9443%-118 - C10 -1F88 - OPSD_BOVIN -
1 PsiBlast_PDB 92.6243%-139 - C10 -3CAP - OPSD_BOVIN -
2 PsiBlast_PDB 92.4143%-100 - C- -3C9L - OPSD_BOVIN -
33 PsiBlast_CBE 92.2843%-130 - C10 -1F88 - OPSD_BOVIN -
13 PsiBlast_PDB 90.9043%-103 - C- -2I35 - OPSD_BOVIN -
20 PsiBlast_PDB 90.7243%-128 - C- -3C9M - OPSD_BOVIN -
14 PsiBlast_PDB 90.1843%-128 - C10 -2I37 - OPSD_BOVIN -
25 PsiBlast_CBE 89.9443%-127 - C10 -2I37 - OPSD_BOVIN -
18 PsiBlast_PDB 89.1843%-108 - C10 -1L9H Error OPSD_BOVIN
23 PsiBlast_CBE 88.9943%-102 - C10 -2PED 3.3 OPSD_BOVIN
29 PsiBlast_CBE 88.9043%-101 - C10 -1U19 2.4 OPSD_BOVIN
24 PsiBlast_CBE 88.7643%-129 - C10 -2I37 - OPSD_BOVIN -
12 PsiBlast_PDB 88.7543%-127 - C10 -2I36 - OPSD_BOVIN -
9 PsiBlast_PDB 87.9943%-102 - C10 -3OAX 2.7 OPSD_BOVIN
28 PsiBlast_CBE 87.7943% -99 - C10 -2G87 2.4 OPSD_BOVIN
11 PsiBlast_PDB 87.7243%-105 - C10 -1HZX 3.7 OPSD_BOVIN
27 PsiBlast_CBE 87.2843% -98 - C10 -2HPY 3.4 OPSD_BOVIN