@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SMO_HUMAN: (2016-01-14 )
MAAARPARGPELPLLGLLLLLLLGDPGRGAASSGNATGPGPRSAGGSARRSAAVTGPPPPLSHCGRAAPCEPLRYNVCLGSVLPYGATSTLLAGDSDSQEEAHGKLVLWSGLRNAPRCWAVIQPLLCAVYMPKCENDRVELPSRTLCQATRGPCAIVERERGWPDFLRCTPDRFPEGCTNEVQNIKFNSSGQCEVPLVRTDNPKSWYEDVEGCGIQCQNPLFTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARREIVCRADGTMRLGEPTSNETLSCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTYQPLSGKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRLGIFGFLAFGFVLITFSCHFYDFFNQAEWERSFRDYVLCQANVTIGLPTKQPIPDCEIKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWCRLTGQSDDEPKRIKKSKMIAKAFSKRHELLQNPGQELSFSMHTVSHDGPVAGLAFDLNEPSADVSSAWAQHVTKMVARRGAILPQDISVTPVATPVPPEEQANLWLVEAEISPELQKRLGRKKKRRKRKKEVCPLAPPPELHPPAPAPSTIPRLPQLPRQKCLVAAGAWGAGDSCRQGAWTLVSNPFCPEPSPPQDPFLPSAPAPVAWAHGRRQGLGPIHSRTNLMDTELMDADSDF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGE_A_10(4JKV)
C562_ECOLX
[Raw transfer]



PGE_A_10(4JKV)
C562_ECOLX
[Raw transfer]



1KS_A_3(4JKV)
C562_ECOLX
[Raw transfer]
1 PsiBlast_PDB 86.70100%-149 - C1 -4JKV 2.4 C562_ECOLX (first)
2 PsiBlast_PDB 86.23100%-149 - C1 -4N4W - SMO_HUMAN -
40 Fugue 86.0680%-121 - C1 -4JKV 10.5 C562_ECOLX (first)
18 PsiBlast_CBE 86.04100%-149 - C1 -4JKV 2.5 C562_ECOLX (first)
5 PsiBlast_PDB 64.3198%-145 - C1 -4QIN - C562_ECOLX (first) -
4 PsiBlast_PDB 63.4098%-145 - C1 -4QIM - C562_ECOLX -
3 PsiBlast_PDB 62.8098%-149 - C1 -4O9R - C562_ECOLX (first) -
19 PsiBlast_CBE 56.5072% -79 - C1 -4C79 - ? -
6 PsiBlast_PDB 54.8972% -81 - C1 -4C79 - ? -
41 Fugue 54.8471% -83 - C1 -4C7A - ? -
7 PsiBlast_PDB 53.8371% -84 - C1 -4C7A - ? -
20 PsiBlast_CBE 53.5371% -80 - C1 -4C7A - ? -
22 HHSearch 46.5130% -68 - C1 -1IJY - FZD8_MOUSE -
12 PsiBlast_PDB 45.0029% -71 - C1 -1IJY - FZD8_MOUSE -
13 PsiBlast_PDB 43.9727% -76 - C1 -5BQE - FZD4_HUMAN -
43 Fugue 43.6525% -51 - C1 -1IJY - FZD8_MOUSE -
42 Fugue 43.2926% -51 - C1 -1IJY - FZD8_MOUSE -
21 HHSearch 42.5128% -81 - C1 -1IJX - SFRP3_MOUSE -
11 PsiBlast_PDB 41.5629% -73 - C1 -4F0A - FZD8_MOUSE -
15 PsiBlast_PDB 41.1927% -82 - C1 -5CM4 - ? -