@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SSR1_HUMAN: (2016-01-14 )
MFPNGTASSPSSSPSPSPGSCGEGGGSRGPGAGAADGMEEPGRNASQNGTLSEGQGSAILISFIYSVVCLVGLCGNSMVIYVILRYAKMKTATNIYILNLAIADELLMLSVPFLVTSTLLRHWPFGALLCRLVLSVDAVNMFTSIYCLTVLSVDRYVAVVHPIKAARYRRPTVAKVVNLGVWVLSLLVILPIVVFSRTAANSDGTVACNMLMPEPAQRWLVGFVLYTFLMGFLLPVGAICLCYVLIIAKMRMVALKAGWQQRKRSERKITLMVMMVVMVFVICWMPFYVVQLVNVFAEQDDATVSQLSVILGYANSCANPILYGFLSDNFKRSFQRILCLSWMDNAAEEPVDYYATALKSRAYSVEDFQPENLESGGVFRNGTCTSRITTL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLC_B_7(4EA3)
C562_ECOLX
[Raw transfer]
2 PsiBlast_PDB 95.1844%-161 - C5 -4RWA - C562_ECOLX (first) -
22 PsiBlast_CBE 94.5144%-160 - C5 -4RWA - C562_ECOLX (first) -
21 PsiBlast_CBE 92.5644%-155 - C5 -4RWD - C562_ECOLX (first) -
3 PsiBlast_PDB 91.5844%-155 - C5 -4RWD - C562_ECOLX (first) -
1 PsiBlast_PDB 90.7943%-157 - C5 -5C1M - ? -
23 PsiBlast_CBE 90.3543%-169 - C5 -4EA3 3.3 C562_ECOLX (first)
4 PsiBlast_PDB 87.9946%-161 - C5 -4N6H - C562_ECOLX (first) -
5 PsiBlast_PDB 87.5043%-168 - C5 -4EA3 - C562_ECOLX (first) -
53 HHSearch 87.0229%-149 - C5 -3ODU - CXCR4_HUMAN (first) -
44 Fugue 86.5328%-162 - C5 -4XNV - P2RY1_HUMAN (first) -
60 HHSearch 85.9928%-145 - C5 -3RZE - ENLYS_BPT4 (first) -
57 HHSearch 85.4025%-146 - C5 -3UON - ACM2_HUMAN (first) -
65 HHSearch 83.5827%-151 - C5 -3PBL - DRD3_HUMAN (first) -
56 HHSearch 83.2326%-142 * C5 *2RH1 - ADRB2_HUMAN (first) -
15 PsiBlast_PDB 82.1725%-163 - C5 -4MBS - CCR5_HUMAN (first) -
20 PsiBlast_PDB 81.4626%-162 - C5 -4XNV - P2RY1_HUMAN -
50 Fugue 78.7822%-125 - C5 -3ODU - CXCR4_HUMAN (first) -
54 HHSearch 77.3722%-140 - C5 -2Z73 - OPSD_TODPA -
63 HHSearch 76.4219%-136 - C5 -3EML - ENLYS_BPT4 -
18 PsiBlast_PDB 75.0329%-154 - C5 -4LDO - -