@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : DYR1A_HUMAN: (2013-07-20 )
MHTGGETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNISDQQVSALSYSDQIQQPLTNQVMPDIVMLQRRMPQTFRDPATAPLRKLSVDLIKTYKHINEVYYAKKKRRHQQGQGDDSSHKKERKVYNDGYDDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTADEGTNTSNSVSTSPAMEQSQSSGTTSSTSSSSGGSSGTSNSGRARSDPTHQHRHSGGHFTAAVQAMDCETHSPQVRQQFPAPLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGNRTRPRVYNSPTNSSSTQDSMEVGHSHHSMTSLSSSTTSSSTSSSSTGNQGNQAYQNRPVAANTLDFGQNGAMDVNLTVYSNPRQETGIAGHPTYQFSANTGPAHYMTEGHLTMRQGADREESPMTGVCVQQSPVASS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_C_3(1J1B)
GSK3B_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




6LQ_A_3(4ACG)
GSK3B_HUMAN
[Raw transfer]




38R_A_2(3ZDU)
CDKL3_HUMAN
[Raw transfer]




ANP_A_7(1Q99)
SKY1_YEAST
[Raw transfer]




ATP_A_2(4FG7)
KCC1A_HUMAN
[Raw transfer]




7YG_A_5(4ACC)
GSK3B_HUMAN
[Raw transfer]




KDI_A_3(4ACH)
GSK3B_HUMAN
[Raw transfer]




GR9_A_3(4ACD)
GSK3B_HUMAN
[Raw transfer]




ANP_B_8(1Q99)
SKY1_YEAST
[Raw transfer]




NR9_A_4(3NR9)
CLK2_HUMAN
[Raw transfer]




3RA_A_3(3RAW)
CLK3_HUMAN
[Raw transfer]




DBQ_A_2(1Z57)
CLK1_HUMAN
[Raw transfer]




GOL_A_6(4GV1)
AKT1_HUMAN
[Raw transfer]




DBQ_A_2(1Z57)
CLK1_HUMAN
[Raw transfer]




GOL_A_3(3N9X)
?
[Raw transfer]




V25_A_2(2VAG)
CLK1_HUMAN
[Raw transfer]




DKI_A_2(2WU6)
CLK3_HUMAN
[Raw transfer]




STU_C_3(1Q3D)
GSK3B_HUMAN
[Raw transfer]




V25_A_2(2WU7)
CLK3_HUMAN
[Raw transfer]




ADE_B_13(1Q8Y)
SKY1_YEAST
[Raw transfer]




BOG_X_3(2FST)
MK14_HUMAN
[Raw transfer]




53 HHSearch 85.3733%-107 - C1 -1Z57 5.0 CLK1_HUMAN
8 PsiBlast_PDB 84.0430%-117 - C1 -2VAG 6.8 CLK1_HUMAN
3 PsiBlast_PDB 81.7930% -97 - C1 -3RAW 7.4 CLK3_HUMAN
1 PsiBlast_PDB 81.1830% -96 - C1 -2WU6 5.0 CLK3_HUMAN
2 PsiBlast_PDB 80.5630% -95 - C1 -2WU7 6.0 CLK3_HUMAN
6 PsiBlast_PDB 79.0130% -97 - C1 -3NR9 7.3 CLK2_HUMAN
50 HHSearch 77.6330%-119 - C1 -3N9X 2.5 ?
58 HHSearch 72.1734%-118 - C1 -1J1B 4.7 GSK3B_HUMAN
16 PsiBlast_PDB 67.6330%-102 - C1 -4ACC 5.4 GSK3B_HUMAN
17 PsiBlast_PDB 66.4330%-100 - C1 -4ACD 5.5 GSK3B_HUMAN
24 PsiBlast_CBE 66.1734%-137 - C1 -1Q8Y 4.3 SKY1_YEAST
19 PsiBlast_PDB 66.0830%-103 - C1 -4ACH 4.3 GSK3B_HUMAN
21 PsiBlast_CBE 66.0534%-133 - C1 -1Q99 5.5 SKY1_YEAST
18 PsiBlast_PDB 65.8730%-102 - C1 -4ACG 6.9 GSK3B_HUMAN
10 PsiBlast_PDB 63.9834%-133 - C1 -1Q99 5.8 SKY1_YEAST
20 PsiBlast_PDB 63.7630% -99 - C1 -1Q3D 7.4 GSK3B_HUMAN
62 HHSearch 63.4930%-119 - C1 -4GV1 2.9 AKT1_HUMAN
57 HHSearch 60.8431%-136 - C1 -4FG7 4.7 KCC1A_HUMAN
61 HHSearch 60.2630%-126 - C1 -2FST 3.3 MK14_HUMAN
14 PsiBlast_PDB 43.2334%-118 - C1 -4BGQ 8.2 CDKL5_HUMAN