@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : ERBB2_HUMAN: (2013-07-20 )
MELAALCRWGLLLALLPPGAASTQVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSFLQDIQEVQGYVLIAHNQVRQVPLQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGGLRELQLRSLTEILKGGVLIQRNPQLCYQDTILWKDIFHKNNQLALTLIDTNRSRACHPCSPMCKGSRCWGESSEDCQSLTRTVCAGGCARCKGPLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMPNPEGRYTFGASCVTACPYNYLSTDVGSCTLVCPLHNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLREVRAVTSANIQEFAGCKKIFGSLAFLPESFDGDPASNTAPLQPEQLQVFETLEEITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNGAYSLTLQGLGISWLGLRSLRELGSGLALIHHNTHLCFVHTVPWDQLFRNPHQALLHTANRPEDECVGEGLACHQLCARGHCWGPGPTQCVNCSQFLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSVTCFGPEADQCVACAHYKDPPFCVARCPSGVKPDLSYMPIWKFPDEEGACQPCPINCTHSCVDLDDKGCPAEQRASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRKYTMRRLLQETELVEPLTPSGAMPNQAQMRILKETELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVSEFSRMARDPQRFVVIQNEDLGPASPLDSTFYRSLLEDDDMGDLVDAEEYLVPQQGFFCPDPAPGAGGMVHHRHRSSSTRSGGGDLTLGLEPSEEEAPRSPLAPSEGAGSDVFDGDLGMGAAKGLQSLPTHDPSPLQRYSEDPTVPLPSETDGYVAPLTCSPQPEYVNQPDVRPQPPSPREGPLPAARPAGATLERPKTLSPGKNGVVKDVFAFGGAVENPEYLTPQGGAAPQPHPPPAFSPAFDNLYYWDQDPPERGAPPSTFKGTPTAENPEYLGLDVPV

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

W2R_A_2(3W2S)

[Raw transfer]




03Q_A_3(3PP0)
ERBB2_HUMAN
[Raw transfer]




03Q_B_4(3PP0)

[Raw transfer]




xxx_B_2(U144)

[Raw transfer]

-

xxx_A_2(U143)

[Raw transfer]

-

ITI_D_12(3LZB)
EGFR_HUMAN
[Raw transfer]




xxx_B_2(U145)

[Raw transfer]

-

xxx_A_2(U139)

[Raw transfer]

-

KJR_A_2(4JR3)
?
[Raw transfer]




KJ8_A_2(4JQ8)
?
[Raw transfer]




ITI_A_9(3LZB)
EGFR_HUMAN
[Raw transfer]




ANP_C_10(3GT8)
EGFR_HUMAN
[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




xxx_D_2(U153)

[Raw transfer]

-

W32_A_2(3W32)

[Raw transfer]




xxx_A_2(U158)

[Raw transfer]

-

ITI_B_10(3LZB)
EGFR_HUMAN
[Raw transfer]




W19_A_2(3W33)

[Raw transfer]




ITI_C_11(3LZB)
EGFR_HUMAN
[Raw transfer]




GW7_A_3(2R4B)
ERBB4_HUMAN
[Raw transfer]




xxx_A_2(U142)

[Raw transfer]

-

xxx_A_2(U152)

[Raw transfer]

-

xxx_A_2(U140)

[Raw transfer]

-

HKI_A_2(3W2Q)

[Raw transfer]




KJQ_A_2(4JQ7)
?
[Raw transfer]




FMM_A_4(1XKK)

[Raw transfer]




03P_C_6(3RCD)
ERBB2_HUMAN
[Raw transfer]




KJV_A_2(4JRV)
?
[Raw transfer]




ANP_A_4(3LMG)
ERBB3_HUMAN
[Raw transfer]




W2P_A_2(3W2P)

[Raw transfer]




xxx_A_2(U154)

[Raw transfer]

-

xxx_A_2(U159)

[Raw transfer]

-

xxx_A_2(U151)

[Raw transfer]

-

xxx_A_2(U157)

[Raw transfer]

-

xxx_A_2(U156)

[Raw transfer]

-

GW7_B_4(2R4B)

[Raw transfer]




ANP_B_17(2GS7)

[Raw transfer]




xxx_B_2(U146)

[Raw transfer]

-

xxx_B_2(U149)

[Raw transfer]

-

FMM_D_4(3BBT)

[Raw transfer]




03P_A_5(3RCD)
ERBB2_HUMAN
[Raw transfer]




xxx_B_2(U147)

[Raw transfer]

-

xxx_B_2(U150)

[Raw transfer]

-

xxx_A_2(U155)

[Raw transfer]

-

xxx_A_2(U148)

[Raw transfer]

-

AEE_A_2(2J6M)

[Raw transfer]




1C9_A_3(4I24)
EGFR_HUMAN
[Raw transfer]




ANP_A_3(3KEX)
ERBB3_HUMAN
[Raw transfer]




ANP_A_16(2GS7)
EGFR_HUMAN
[Raw transfer]




ANP_B_6(3LMG)

[Raw transfer]




AQ4_A_2(1M17)

[Raw transfer]




ANP_A_3(2ITN)

[Raw transfer]




1C9_B_4(4I24)

[Raw transfer]




AEE_A_2(2ITP)

[Raw transfer]




AQ4_A_2(4HJO)

[Raw transfer]




xxx_A_2(U141)

[Raw transfer]

-

112_B_4(2GS6)

[Raw transfer]




4JZ_A_2(3FZT)

[Raw transfer]




HYZ_A_4(2RGP)

[Raw transfer]




AEE_A_2(2ITT)

[Raw transfer]




IRE_A_2(4I22)

[Raw transfer]




POX_A_4(3BEL)

[Raw transfer]




03P_A_2(3W2O)

[Raw transfer]




xxx_A_2(U160)

[Raw transfer]

-

ANP_A_2(3VJN)

[Raw transfer]




AS6_A_2(2XVD)

[Raw transfer]




0UN_A_3(3IKA)
EGFR_HUMAN
[Raw transfer]




ANP_A_2(2ITV)

[Raw transfer]




FMM_B_3(3BBT)
ERBB4_HUMAN
[Raw transfer]




IRE_A_2(2ITO)

[Raw transfer]




STU_A_2(2ITQ)

[Raw transfer]




ANP_A_2(2ITX)

[Raw transfer]




AGS_A_2(3FZP)

[Raw transfer]




3JZ_A_2(3FZR)

[Raw transfer]




0WN_A_2(4G5J)

[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




1C9_A_2(4I23)

[Raw transfer]




IRE_A_2(2ITY)

[Raw transfer]




P1E_A_7(3H3C)

[Raw transfer]




0VF_A_2(4FYO)

[Raw transfer]




ANP_A_2(3VJO)

[Raw transfer]




0WN_A_3(4G5P)
EGFR_HUMAN
[Raw transfer]




IRE_A_2(3UG2)

[Raw transfer]




349_A_2(3ET7)

[Raw transfer]




V4Z_A_4(4AOJ)
NTRK1_HUMAN
[Raw transfer]




STU_A_2(2ITU)

[Raw transfer]




PEG_C_6(3BCE)

[Raw transfer]




MES_A_2(3UG1)

[Raw transfer]




MES_A_3(3UG2)

[Raw transfer]




MES_A_3(3W2Q)

[Raw transfer]




22 PsiBlast_CBE 70.8599%-108 - C3 -3PP0 10.2
5 PsiBlast_PDB 70.5999%-111 - C3 -3PP0 10.3 ERBB2_HUMAN
39 PsiBlast_CBE 70.1477%-106 - C3 -3W32 10.6
17 PsiBlast_PDB 69.8977%-104 - C3 -3IKA 5.3 EGFR_HUMAN
62 PsiBlast_CBE 69.7377%-115 - C3 -2GS7 4.6
76 PsiBlast_CBE 69.6277%-112 - C3 -3W2O 8.6
40 PsiBlast_CBE 69.5177%-114 - C3 -3W2S 11.3
19 PsiBlast_PDB 69.2278%-113 - C3 -1M17 5.6
54 PsiBlast_CBE 69.1577%-115 - C3 -3VJN 3.8
38 PsiBlast_CBE 69.1377%-116 - C3 -3W33 10.1
63 PsiBlast_CBE 69.0877%-113 - C3 -2GS7 4.3 EGFR_HUMAN
83 PsiBlast_CBE 69.0278%-126 - C3 -2RGP 9.4
75 PsiBlast_CBE 68.9877%-110 - C3 -3W2P 7.7
41 PsiBlast_CBE 68.9677%-105 - C3 -2GS6 4.5
74 PsiBlast_CBE 68.8277%-110 - C3 -3W2Q 7.8
64 PsiBlast_CBE 68.7377%-116 - C3 -4JRV 9.7 ?
61 PsiBlast_CBE 68.6377%-112 - C3 -3GT8 5.2 EGFR_HUMAN
20 PsiBlast_PDB 68.6278%-122 - C3 -1XKK 10.8
69 PsiBlast_CBE 68.4274%-110 - C3 -3BCE 2.8
55 PsiBlast_CBE 68.3277%-111 - C3 -3UG2 6.2
51 PsiBlast_CBE 68.2977%-104 - C3 -2ITO 6.8
65 PsiBlast_CBE 68.2777%-116 - C3 -4JR3 9.6 ?
67 PsiBlast_CBE 68.2577%-113 - C3 -4JQ7 8.8 ?
30 PsiBlast_CBE 68.1178%-106 - C3 -4I23 6.5
66 PsiBlast_CBE 68.0777%-115 - C3 -4JQ8 10.0 ?
81 PsiBlast_CBE 68.0478%-111 - C3 -2R4B 9.7 ERBB4_HUMAN
60 PsiBlast_CBE 68.0277%-108 - C3 -2ITT 8.3
31 PsiBlast_CBE 67.9378%-107 - C3 -3VJO 3.6
21 PsiBlast_CBE 67.9099%-108 - C3 -3RCD 9.3 ERBB2_HUMAN
73 PsiBlast_CBE 67.7577%-106 - C3 -4I22 7.3
82 PsiBlast_CBE 67.7378%-120 - C3 -3BEL 8.7
46 PsiBlast_CBE 67.7377%-105 - C3 -4I24 6.3 EGFR_HUMAN
68 PsiBlast_CBE 67.7278%-114 - C3 -4HJO 6.9
36 PsiBlast_CBE 67.7277%-105 - C3 -2ITX 4.4
87 PsiBlast_CBE 67.7180%-118 - C3 -3LZB 10.3 EGFR_HUMAN
43 PsiBlast_CBE 67.7177%-106 - C3 -4G5J 6.2
53 PsiBlast_CBE 67.6677%-111 - C3 -4G5P 5.8 EGFR_HUMAN
32 PsiBlast_CBE 67.6077%-117 - C3 -3POZ 10.8
59 PsiBlast_CBE 67.5977%-108 - C3 -2ITU 6.8
33 PsiBlast_CBE 67.5877%-104 - C3 -2J6M 6.8
52 PsiBlast_CBE 67.2077%-109 - C3 -2ITN 4.9
58 PsiBlast_CBE 67.1377%-110 - C3 -2ITV 5.1
80 PsiBlast_CBE 67.1278%-112 - C3 -2R4B 9.3
50 PsiBlast_CBE 67.1277%-107 - C3 -2ITP 7.9
86 PsiBlast_CBE 67.1080%-115 - C3 -3LZB 11.0 EGFR_HUMAN
6 PsiBlast_PDB 66.9899%-109 - C3 -3RCD 9.4 ERBB2_HUMAN
35 PsiBlast_CBE 66.8677%-108 - C3 -2ITY 6.3
49 PsiBlast_CBE 66.7577%-108 - C3 -2ITQ 7.4
45 PsiBlast_CBE 66.6877%-101 - C3 -4I24 6.4
85 PsiBlast_CBE 66.6180%-114 - C3 -3LZB 10.7 EGFR_HUMAN
84 PsiBlast_CBE 66.1580%-115 - C3 -3LZB 10.2 EGFR_HUMAN
56 PsiBlast_CBE 65.9877%-109 - C3 -3UG1 2.3
72 PsiBlast_CBE 65.2274%-118 - C3 -3BBT 8.3 ERBB4_HUMAN
71 PsiBlast_CBE 65.1174%-118 - C3 -3BBT 8.2
92 PsiBlast_CBE 63.0860%-115 - C3 -3LMG 5.6 ERBB3_HUMAN
91 PsiBlast_CBE 61.8460%-117 - C3 -3LMG 6.1
93 PsiBlast_CBE 61.3860%-113 - C3 -3KEX 4.8 ERBB3_HUMAN
136 HHSearch 57.8534% -93 - C3 -4AOJ 6.7 NTRK1_HUMAN
104 PsiBlast_CBE 57.6038% -94 - C3 -4BB4 6.3
97 PsiBlast_CBE 57.0939% -99 - C3 -3H3C 6.5
138 HHSearch 56.4141% -98 - C3 -4FYO 6.9
105 PsiBlast_CBE 56.3838% -86 - C3 -2XVD 6.4
100 PsiBlast_CBE 56.1339% -94 - C3 -3FZR 5.8
101 PsiBlast_CBE 56.0439% -98 - C3 -3FZP 4.6
98 PsiBlast_CBE 56.0439% -92 - C3 -3FZT 10.3
102 PsiBlast_CBE 53.6239% -95 - C3 -3ET7 6.4


Add PDB User Result:

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

W2R_A_2(3W2S)

[Raw transfer]




03Q_A_3(3PP0)
ERBB2_HUMAN
[Raw transfer]




03Q_B_4(3PP0)

[Raw transfer]




xxx_B_2(U144)

[Raw transfer]

-

xxx_A_2(U143)

[Raw transfer]

-

ITI_D_12(3LZB)
EGFR_HUMAN
[Raw transfer]




xxx_B_2(U145)

[Raw transfer]

-

xxx_A_2(U139)

[Raw transfer]

-

KJR_A_2(4JR3)
?
[Raw transfer]




KJ8_A_2(4JQ8)
?
[Raw transfer]




ITI_A_9(3LZB)
EGFR_HUMAN
[Raw transfer]




ANP_C_10(3GT8)
EGFR_HUMAN
[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




xxx_D_2(U153)

[Raw transfer]

-

W32_A_2(3W32)

[Raw transfer]




xxx_A_2(U158)

[Raw transfer]

-

ITI_B_10(3LZB)
EGFR_HUMAN
[Raw transfer]




W19_A_2(3W33)

[Raw transfer]




ITI_C_11(3LZB)
EGFR_HUMAN
[Raw transfer]




GW7_A_3(2R4B)
ERBB4_HUMAN
[Raw transfer]




xxx_A_2(U142)

[Raw transfer]

-

xxx_A_2(U152)

[Raw transfer]

-

xxx_A_2(U140)

[Raw transfer]

-

HKI_A_2(3W2Q)

[Raw transfer]




KJQ_A_2(4JQ7)
?
[Raw transfer]




FMM_A_4(1XKK)

[Raw transfer]




03P_C_6(3RCD)
ERBB2_HUMAN
[Raw transfer]




KJV_A_2(4JRV)
?
[Raw transfer]




ANP_A_4(3LMG)
ERBB3_HUMAN
[Raw transfer]




W2P_A_2(3W2P)

[Raw transfer]




xxx_A_2(U154)

[Raw transfer]

-

xxx_A_2(U159)

[Raw transfer]

-

xxx_A_2(U151)

[Raw transfer]

-

xxx_A_2(U157)

[Raw transfer]

-

xxx_A_2(U156)

[Raw transfer]

-

GW7_B_4(2R4B)

[Raw transfer]




ANP_B_17(2GS7)

[Raw transfer]




xxx_B_2(U146)

[Raw transfer]

-

xxx_B_2(U149)

[Raw transfer]

-

FMM_D_4(3BBT)

[Raw transfer]




03P_A_5(3RCD)
ERBB2_HUMAN
[Raw transfer]




xxx_B_2(U147)

[Raw transfer]

-

xxx_B_2(U150)

[Raw transfer]

-

xxx_A_2(U155)

[Raw transfer]

-

xxx_A_2(U148)

[Raw transfer]

-

AEE_A_2(2J6M)

[Raw transfer]




1C9_A_3(4I24)
EGFR_HUMAN
[Raw transfer]




ANP_A_3(3KEX)
ERBB3_HUMAN
[Raw transfer]




ANP_A_16(2GS7)
EGFR_HUMAN
[Raw transfer]




ANP_B_6(3LMG)

[Raw transfer]




AQ4_A_2(1M17)

[Raw transfer]




ANP_A_3(2ITN)

[Raw transfer]




1C9_B_4(4I24)

[Raw transfer]




AEE_A_2(2ITP)

[Raw transfer]




AQ4_A_2(4HJO)

[Raw transfer]




xxx_A_2(U141)

[Raw transfer]

-

112_B_4(2GS6)

[Raw transfer]




4JZ_A_2(3FZT)

[Raw transfer]




HYZ_A_4(2RGP)

[Raw transfer]




AEE_A_2(2ITT)

[Raw transfer]




IRE_A_2(4I22)

[Raw transfer]




POX_A_4(3BEL)

[Raw transfer]




03P_A_2(3W2O)

[Raw transfer]




xxx_A_2(U160)

[Raw transfer]

-

ANP_A_2(3VJN)

[Raw transfer]




AS6_A_2(2XVD)

[Raw transfer]




0UN_A_3(3IKA)
EGFR_HUMAN
[Raw transfer]




ANP_A_2(2ITV)

[Raw transfer]




FMM_B_3(3BBT)
ERBB4_HUMAN
[Raw transfer]




IRE_A_2(2ITO)

[Raw transfer]




STU_A_2(2ITQ)

[Raw transfer]




ANP_A_2(2ITX)

[Raw transfer]




AGS_A_2(3FZP)

[Raw transfer]




3JZ_A_2(3FZR)

[Raw transfer]




0WN_A_2(4G5J)

[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




1C9_A_2(4I23)

[Raw transfer]




IRE_A_2(2ITY)

[Raw transfer]




P1E_A_7(3H3C)

[Raw transfer]




0VF_A_2(4FYO)

[Raw transfer]




ANP_A_2(3VJO)

[Raw transfer]




0WN_A_3(4G5P)
EGFR_HUMAN
[Raw transfer]




IRE_A_2(3UG2)

[Raw transfer]




349_A_2(3ET7)

[Raw transfer]




V4Z_A_4(4AOJ)
NTRK1_HUMAN
[Raw transfer]




STU_A_2(2ITU)

[Raw transfer]




PEG_C_6(3BCE)

[Raw transfer]




MES_A_2(3UG1)

[Raw transfer]




MES_A_3(3UG2)

[Raw transfer]




MES_A_3(3W2Q)

[Raw transfer]




139 -100%-115 - C3 -U139 8.0
140 -100%-115 - C3 -U140 4.9
141 -100%-116 - C3 -U141 6.5
142 -100%-111 - C3 -U142 5.7
143 -100%-126 - C3 -U143 10.2
144 -100%-108 - C3 -U144 10.3
145 -100%-108 - C3 -U145 9.7
146 -100%-105 - C3 -U146 7.3
147 -100%-105 - C3 -U147 7.1
148 -100%-124 - C3 -U148 7.8
149 -100%-105 - C3 -U149 6.8
150 -100%-105 - C3 -U150 5.0
151 -100%-115 - C3 -U151 8.6
152 -100%-115 - C3 -U152 6.1
153 -100%-118 - C3 -U153 10.6
154 -100%-115 - C3 -U154 6.8
155 -100%-119 - C3 -U155 6.8
156 -100%-121 - C3 -U156 7.2
157 -100%-107 - C3 -U157 7.0
158 -100%-129 - C3 -U158 9.6
159 -100%-121 - C3 -U159 7.6
160 -100%-111 - C3 -U160 6.8
161 -100%-115 - C3 -U161 - -
162 -100%-115 - C3 -U162 - -
163 -100%-121 - C3 -U163 - -
164 -100%-116 - C3 -U164 - -
165 -100%-126 - C3 -U165 - -
166 -100%-108 - C3 -U166 - -
167 -100%-111 - C3 -U167 - -
168 -100%-119 - C3 -U168 - -
169 -100%-108 - C3 -U169 - -
170 -100%-105 - C3 -U170 - -
171 -100%-124 - C3 -U171 - -
172 -100%-105 - C3 -U172 - -
173 -100%-105 - C3 -U173 - -
174 -100%-115 - C3 -U174 - -
175 -100%-119 - C3 -U175 - -
176 -100%-111 - C3 -U176 - -
177 -100%-116 - C3 -U177 - -
178 -100%-119 - C3 -U178 - -
179 -100%-111 - C3 -U179 - -
180 -100%-104 - C3 -U180 - -
181 -100%-111 - C3 -U181 - -
182 -100%-119 - C3 -U182 - -
183 -100%-121 - C3 -U183 - -
184 -100%-107 - C3 -U184 - -