@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2013-07-20 )
MKPATGLWVWVSLLVAAGTVQPSDSQSVCAGTENKLSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSFLRSVREVTGYVLVALNQFRYLPLENLRIIRGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLTEILNGGVYVDQNKFLCYADTIHWQDIVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENGSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPCHPNCTQGCNGPTSHDCIYYPWTGHSTLPQHARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKRALRRFLETELVEPLTPSGTAPNQAQLRILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARDPQRYLVIQGDDRMKLPSPNDSKFFQNLLDEEDLEDMMDAEEYLVPQAFNIPPPIYTSRARIDSNRSEIGHSPPPAYTPMSGNQFVYRDGGFAAEQGVSVPYRAPTSTIPEAPVAQGATAEIFDDSCCNGTLRKPVAPHVQEDSSTQRYSADPTVFAPERSPRGELDEEGYMTPMRDKPKQEYLNPVEENPFVSRRKNGDLQALDNPEYHNASNGPPKAEDEYVNEPLYLNTFANTLGKAEYLKNNILSMPEKAKKAFDNPDYWNHSLPPRSTLQHPDYLQEYSTKYFYKQNGRIRPIVAENPEYLSEFSLKPGTVLPPPPYRHRNTVV

Atome Classification :

(71 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

KJR_A_2(4JR3)
?
[Raw transfer]




W19_A_2(3W33)

[Raw transfer]




KJV_A_2(4JRV)
?
[Raw transfer]




GW7_A_3(2R4B)
ERBB4_HUMAN
[Raw transfer]




KJ8_A_2(4JQ8)
?
[Raw transfer]




W32_A_2(3W32)

[Raw transfer]




KJQ_A_2(4JQ7)
?
[Raw transfer]




GW7_B_4(2R4B)

[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




AQ4_A_2(1M17)

[Raw transfer]




FMM_D_4(3BBT)

[Raw transfer]




ANP_A_3(2ITN)

[Raw transfer]




AQ4_A_2(4HJO)

[Raw transfer]




112_B_4(2GS6)

[Raw transfer]




STU_A_2(2ITQ)

[Raw transfer]




FMM_B_3(3BBT)
ERBB4_HUMAN
[Raw transfer]




ANP_A_2(2ITX)

[Raw transfer]




IRE_A_2(2ITY)

[Raw transfer]




STU_A_2(2ITU)

[Raw transfer]




PEG_C_6(3BCE)

[Raw transfer]




11 PsiBlast_PDB 74.28100%-126 - C5 -2R4B 9.8 ERBB4_HUMAN
27 PsiBlast_CBE 74.18100%-121 - C5 -3BCE 2.8
29 PsiBlast_CBE 73.52100%-125 - C5 -2R4B 9.4
74 PsiBlast_CBE 73.4677%-118 - C5 -3W2O - -
7 PsiBlast_PDB 73.33100%-129 - C5 -3BBT 8.2 ERBB4_HUMAN
39 PsiBlast_CBE 72.6377%-110 - C5 -3W32 10.6
73 PsiBlast_CBE 72.5777%-117 - C5 -3W2P - -
28 PsiBlast_CBE 72.03100%-130 - C5 -3BBT 8.4
60 PsiBlast_CBE 71.8277%-122 - C5 -3VJN - -
42 PsiBlast_CBE 71.8277%-121 - C5 -3POZ 10.6
38 PsiBlast_CBE 71.7777%-121 - C5 -3W33 10.2
72 PsiBlast_CBE 71.7577%-116 - C5 -3W2Q - -
123 HHSearch 71.7277%-121 - C5 -3POZ - -
50 PsiBlast_CBE 71.7077%-119 - C5 -4JR3 9.5 ?
83 PsiBlast_CBE 71.6077%-126 - C5 -2RGP - -
40 PsiBlast_CBE 71.5677%-119 - C5 -3W2S - -
35 PsiBlast_CBE 71.5377%-114 - C5 -4I23 - -
32 PsiBlast_CBE 71.4977%-108 - C5 -3IKA - EGFR_HUMAN -
59 PsiBlast_CBE 71.3677%-118 - C5 -2ITN 4.9
33 PsiBlast_CBE 71.1577%-117 - C5 -1M17 5.7
41 PsiBlast_CBE 71.1177%-111 - C5 -2GS6 4.4
51 PsiBlast_CBE 71.0477%-118 - C5 -4JQ8 10.0 ?
49 PsiBlast_CBE 71.0477%-121 - C5 -4JRV 9.7 ?
68 PsiBlast_CBE 71.0077%-115 - C5 -2ITU 6.9
36 PsiBlast_CBE 70.9677%-124 - C5 -1XKK - -
67 PsiBlast_CBE 70.8577%-117 - C5 -2ITV - -
52 PsiBlast_CBE 70.8577%-116 - C5 -4JQ7 8.9 ?
34 PsiBlast_CBE 70.7677%-111 - C5 -3VJO - -
82 PsiBlast_CBE 70.7577%-126 - C5 -3BEL - -
64 PsiBlast_CBE 70.7077%-119 - C5 -2GS7 - -
69 PsiBlast_CBE 70.6477%-118 - C5 -2ITT - -
65 PsiBlast_CBE 70.5977%-118 - C5 -2GS7 - EGFR_HUMAN -
61 PsiBlast_CBE 70.5877%-118 - C5 -3UG2 - -
63 PsiBlast_CBE 70.5077%-116 - C5 -3GT8 - EGFR_HUMAN -
55 PsiBlast_CBE 70.4777%-119 - C5 -4G5P - EGFR_HUMAN -
43 PsiBlast_CBE 70.4277%-109 - C5 -2J6M - -
46 PsiBlast_CBE 70.2177%-111 - C5 -2ITX 4.4
56 PsiBlast_CBE 70.1577%-113 - C5 -2ITQ 7.5
58 PsiBlast_CBE 70.0877%-114 - C5 -2ITO - -
45 PsiBlast_CBE 70.0777%-118 - C5 -2ITY 6.3
62 PsiBlast_CBE 69.6577%-112 - C5 -3UG1 - -
57 PsiBlast_CBE 69.6477%-113 - C5 -2ITP - -
78 PsiBlast_CBE 69.5174%-112 - C5 -3PP0 - ERBB2_HUMAN -
70 PsiBlast_CBE 69.4177%-119 - C5 -4HJO 6.8
37 PsiBlast_CBE 69.3677%-107 - C5 -4G5J - -
77 PsiBlast_CBE 69.2574%-111 - C5 -3PP0 - -
88 PsiBlast_CBE 69.1779%-122 - C5 -3LZB - EGFR_HUMAN -
89 PsiBlast_CBE 68.9279%-123 - C5 -3LZB - EGFR_HUMAN -
54 PsiBlast_CBE 68.7577%-114 - C5 -4I24 - EGFR_HUMAN -
135 HHSearch 68.6777%-123 * C5 *3LZB - EGFR_HUMAN -
71 PsiBlast_CBE 68.6576%-112 - C5 -4I22 - -
86 PsiBlast_CBE 68.3079%-120 - C5 -3LZB - EGFR_HUMAN -
87 PsiBlast_CBE 68.1679%-121 - C5 -3LZB - EGFR_HUMAN -
53 PsiBlast_CBE 67.5677%-108 - C5 -4I24 - -
95 PsiBlast_CBE 67.5162%-120 - C5 -3LMG - ERBB3_HUMAN -
94 PsiBlast_CBE 67.1462%-122 - C5 -3LMG - -
75 PsiBlast_CBE 65.6574%-110 - C5 -3RCD - ERBB2_HUMAN -
76 PsiBlast_CBE 65.2674%-111 - C5 -3RCD - ERBB2_HUMAN -
96 PsiBlast_CBE 64.4364%-119 - C5 -3KEX - ERBB3_HUMAN -
133 HHSearch 60.8737%-100 - C5 -4AOJ - NTRK1_HUMAN -
101 PsiBlast_CBE 60.7039%-103 - C5 -2J0J - FAK1_CHICK -
103 PsiBlast_CBE 60.6639%-110 - C5 -3PXK - FAK1_HUMAN -
102 PsiBlast_CBE 60.4839%-107 - C5 -3PXK - -
99 PsiBlast_CBE 60.3139%-104 - C5 -4EBW - -
97 PsiBlast_CBE 60.3039%-101 - C5 -1MQB - -
100 PsiBlast_CBE 60.1439%-105 - C5 -4EBV - -
98 PsiBlast_CBE 58.9739% -99 - C5 -1MQB - EPHA2_HUMAN -
104 PsiBlast_CBE 58.8139%-103 - C5 -4I4F - -
136 HHSearch 57.8042%-108 - C5 -4FYO - -
106 Fugue 55.4738%-101 - C5 -1BYG - CSK_HUMAN -
109 Fugue 39.9718% -48 - C5 -4EUT - TBK1_HUMAN -


Add PDB User Result:

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

KJR_A_2(4JR3)
?
[Raw transfer]




W19_A_2(3W33)

[Raw transfer]




KJV_A_2(4JRV)
?
[Raw transfer]




GW7_A_3(2R4B)
ERBB4_HUMAN
[Raw transfer]




KJ8_A_2(4JQ8)
?
[Raw transfer]




W32_A_2(3W32)

[Raw transfer]




KJQ_A_2(4JQ7)
?
[Raw transfer]




GW7_B_4(2R4B)

[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




AQ4_A_2(1M17)

[Raw transfer]




FMM_D_4(3BBT)

[Raw transfer]




ANP_A_3(2ITN)

[Raw transfer]




AQ4_A_2(4HJO)

[Raw transfer]




112_B_4(2GS6)

[Raw transfer]




STU_A_2(2ITQ)

[Raw transfer]




FMM_B_3(3BBT)
ERBB4_HUMAN
[Raw transfer]




ANP_A_2(2ITX)

[Raw transfer]




IRE_A_2(2ITY)

[Raw transfer]




STU_A_2(2ITU)

[Raw transfer]




PEG_C_6(3BCE)

[Raw transfer]




137 -100%-125 - C5 -U137 - -
138 -100%-121 - C5 -U138 - -
139 -100%-124 - C5 -U139 - -
140 -100%-130 - C5 -U140 - -
141 -100%-130 - C5 -U141 - -
142 -100%-124 - C5 -U142 - -
143 -100%-130 - C5 -U143 - -
144 -100%-121 - C5 -U144 - -
145 -100%-125 - C5 -U145 - -
146 -100%-125 - C5 -U146 - -
147 -100%-121 - C5 -U147 - -
148 -100%-124 - C5 -U148 - -
149 -100%-125 - C5 -U149 - -
150 -100%-125 - C5 -U150 - -
151 -100%-124 - C5 -U151 - -
152 -100%-121 - C5 -U152 - -
153 -100%-125 - C5 -U153 - -